AT1G52300

Description : Zinc-binding ribosomal protein family protein

Gene families : OG0002755 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002755_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G52300
Cluster	HCCA: Cluster_4

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00109p00029660	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.1	OrthoFinder output from all 47 species
Ala_g31967	No alias	component *(eL37) of large ribosomal-subunit (LSU)...	0.26	OrthoFinder output from all 47 species
Als_g01368	No alias	component *(eL37) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Aob_g02563	No alias	component *(eL37) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Aop_g18943	No alias	component *(eL37) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aop_g22710	No alias	component *(eL37) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Aop_g28619	No alias	component *(eL37) of large ribosomal-subunit (LSU)...	0.21	OrthoFinder output from all 47 species
Aop_g67698	No alias	component *(eL37) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Aspi01Gene09915.t1	Aspi01Gene09915	component *(eL37) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aspi01Gene35665.t1	Aspi01Gene35665	component *(eL37) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s0375.g067257	No alias	component *(eL37) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cba_g68198	No alias	component *(eL37) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Ceric.13G060700.1	Ceric.13G060700	component *(eL37) of large ribosomal-subunit (LSU)...	0.25	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020610.80	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.13	OrthoFinder output from all 47 species
Cre10.g430400	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.36	OrthoFinder output from all 47 species
Dac_g40440	No alias	component *(eL37) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Dac_g42769	No alias	component *(eL37) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ehy_g01950	No alias	component *(eL37) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ehy_g28231	No alias	component *(eL37) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
GSVIVT01017081001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.4	OrthoFinder output from all 47 species
GSVIVT01035677001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.25	OrthoFinder output from all 47 species
Gb_29003	No alias	component RPL37 of LSU proteome component	0.29	OrthoFinder output from all 47 species
Gb_33514	No alias	component RPL37 of LSU proteome component	0.2	OrthoFinder output from all 47 species
LOC_Os02g56990.1	LOC_Os02g56990	component RPL37 of LSU proteome component	0.29	OrthoFinder output from all 47 species
LOC_Os08g03450.1	LOC_Os08g03450	component RPL37 of LSU proteome component	0.19	OrthoFinder output from all 47 species
Lfl_g21627	No alias	component *(eL37) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
MA_129829g0010	No alias	component RPL37 of LSU proteome component	0.05	OrthoFinder output from all 47 species
MA_741492g0010	No alias	component RPL37 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Mp2g12400.1	No alias	component RPL37 of LSU proteome component	0.11	OrthoFinder output from all 47 species
Pp3c15_4370V3.1	Pp3c15_4370	Zinc-binding ribosomal protein family protein	0.06	OrthoFinder output from all 47 species
Pp3c18_13160V3.1	Pp3c18_13160	Zinc-binding ribosomal protein family protein	0.31	OrthoFinder output from all 47 species
Pp3c20_2550V3.1	Pp3c20_2550	Zinc-binding ribosomal protein family protein	0.24	OrthoFinder output from all 47 species
Pp3c21_9910V3.1	Pp3c21_9910	Zinc-binding ribosomal protein family protein	0.17	OrthoFinder output from all 47 species
Pp3c23_17260V3.1	Pp3c23_17260	Zinc-binding ribosomal protein family protein	0.26	OrthoFinder output from all 47 species
Pp3c9_8500V3.1	Pp3c9_8500	Zinc-binding ribosomal protein family protein	0.16	OrthoFinder output from all 47 species
Ppi_g23003	No alias	component *(eL37) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g18328	No alias	component *(eL37) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g40680	No alias	component *(eL37) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Solyc03g120780.3.1	Solyc03g120780	component RPL37 of LSU proteome component	0.15	OrthoFinder output from all 47 species
Solyc06g066660.4.1	Solyc06g066660	component RPL37 of LSU proteome component	0.33	OrthoFinder output from all 47 species
Solyc08g068180.3.1	Solyc08g068180	component RPL37 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Spa_g37746	No alias	component *(eL37) of large ribosomal-subunit (LSU)...	0.15	OrthoFinder output from all 47 species
Tin_g37275	No alias	component *(eL37) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Zm00001e001908_P001	Zm00001e001908	component RPL37 of LSU proteome component	0.29	OrthoFinder output from all 47 species
Zm00001e013434_P001	Zm00001e013434	component RPL37 of LSU proteome component	0.31	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005840	ribosome	ISS	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022613	ribonucleoprotein complex biogenesis	None	Extended
CC	GO:0022626	cytosolic ribosome	IDA	Interproscan
BP	GO:0032259	methylation	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0042254	ribosome biogenesis	ISS	Interproscan
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0005732	sno(s)RNA-containing ribonucleoprotein complex	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	HCCA
CC	GO:0022627	cytosolic small ribosomal subunit	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001569	Ribosomal_L37e	2	53

External Links

No external refs found!

AT1G52300

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation