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  5. AT1G52280

AT1G52280 (AtRABG3d, RABG3d)


Aliases : AtRABG3d, RABG3d

Description : RAB GTPase homolog G3D


Gene families : OG0000865 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000865_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G52280

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00072050 AtRABG3d,... Vesicle trafficking.regulation of membrane tethering and... 0.06 OrthoFinder output from all 47 species
Dac_g04092 AtRABG3d, RABG3d G-class RAB GTPase & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g07308 ATRABG3C, ATRAB7D, RABG3c G-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os01g12730.1 AtRABG3d,... G-class RAB GTPase 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0034.g011168 ATRABG3C, ATRAB7D, RABG3c G-class RAB GTPase & original description: CDS=38-799 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0287.g027148 ATRABG3C, ATRAB7D, RABG3c G-class RAB GTPase & original description: CDS=209-802 0.02 OrthoFinder output from all 47 species
Sam_g07442 No alias G-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g120750.3.1 AtRABG3d,... G-class RAB GTPase 0.04 OrthoFinder output from all 47 species
Zm00001e032146_P002 ATRAB7B, RAB7B,... G-class RAB GTPase 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding ISS Interproscan
CC GO:0005773 vacuole IDA Interproscan
CC GO:0005774 vacuolar membrane IDA Interproscan
CC GO:0005794 Golgi apparatus IDA Interproscan
CC GO:0005886 plasma membrane IDA Interproscan
BP GO:0016192 vesicle-mediated transport RCA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003779 actin binding IEP HCCA
CC GO:0005802 trans-Golgi network IEP HCCA
CC GO:0005856 cytoskeleton IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0007015 actin filament organization IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009741 response to brassinosteroid IEP HCCA
BP GO:0009825 multidimensional cell growth IEP HCCA
BP GO:0009832 plant-type cell wall biogenesis IEP HCCA
CC GO:0015629 actin cytoskeleton IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0042546 cell wall biogenesis IEP HCCA
BP GO:0043473 pigmentation IEP HCCA
BP GO:0043476 pigment accumulation IEP HCCA
BP GO:0043478 pigment accumulation in response to UV light IEP HCCA
BP GO:0043479 pigment accumulation in tissues in response to UV light IEP HCCA
BP GO:0043480 pigment accumulation in tissues IEP HCCA
BP GO:0043481 anthocyanin accumulation in tissues in response to UV light IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0048767 root hair elongation IEP HCCA
MF GO:0051015 actin filament binding IEP HCCA
BP GO:0051017 actin filament bundle assembly IEP HCCA
BP GO:0061572 actin filament bundle organization IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0097435 supramolecular fiber organization IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 10 176
No external refs found!