AT1G50840 (POLGAMMA2)

Aliases : POLGAMMA2

Description : polymerase gamma 2

Gene families : OG0003071 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003071_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G50840
Cluster	HCCA: Cluster_11

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00062p00102370	POLGAMMA2,...	Cell cycle.organelle machineries.DNA replication.DNA...	0.05	OrthoFinder output from all 47 species
Aev_g03409	POLGAMMA2	DNA polymerase *(POP) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g12949	POLGAMMA2	DNA polymerase *(POP) & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g18706	POLGAMMA2	DNA polymerase *(POP) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.10G031600.1	POLGAMMA2,...	DNA polymerase *(POP) & original description:...	0.03	OrthoFinder output from all 47 species
Dcu_g01959	POLGAMMA1	DNA polymerase *(POP) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01014163001	POLGAMMA2	Cell cycle.organelle machineries.DNA replication.DNA...	0.04	OrthoFinder output from all 47 species
Gb_07861	POLGAMMA2	DNA polymerase (POP)	0.05	OrthoFinder output from all 47 species
Gb_40886	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
LOC_Os04g54500.1	POLGAMMA2, LOC_Os04g54500	DNA polymerase (POP)	0.06	OrthoFinder output from all 47 species
Lfl_g02364	POLGAMMA2	DNA polymerase *(POP) & original description: none	0.08	OrthoFinder output from all 47 species
MA_10436241g0010	POLGAMMA2	DNA polymerase (POP)	0.03	OrthoFinder output from all 47 species
MA_10436457g0010	POLGAMMA2	DNA polymerase (POP)	0.04	OrthoFinder output from all 47 species
Mp3g17010.1	POLGAMMA2	DNA polymerase (POP)	0.04	OrthoFinder output from all 47 species
Msp_g13674	POLGAMMA2	DNA polymerase *(POP) & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g16045	POLGAMMA2	DNA polymerase *(POP) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g18234	POLGAMMA2	DNA polymerase *(POP) & original description: none	0.03	OrthoFinder output from all 47 species
Pp3c8_21620V3.1	POLGAMMA2, Pp3c8_21620	polymerase gamma 1	0.02	OrthoFinder output from all 47 species
Smo82310	POLGAMMA2	Cell cycle.organelle machineries.DNA replication.DNA...	0.03	OrthoFinder output from all 47 species
Solyc07g064330.3.1	POLGAMMA2, Solyc07g064330	DNA polymerase (POP)	0.06	OrthoFinder output from all 47 species
Zm00001e041749_P001	POLGAMMA2, Zm00001e041749	DNA polymerase (POP)	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003887	DNA-directed DNA polymerase activity	ISS	Interproscan
MF	GO:0003887	DNA-directed DNA polymerase activity	TAS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005739	mitochondrion	IDA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	ISS	Interproscan
BP	GO:0006261	DNA-templated DNA replication	None	Extended
BP	GO:0006264	mitochondrial DNA replication	IMP	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0032042	mitochondrial DNA metabolic process	None	Extended
BP	GO:0033258	plastid DNA metabolic process	None	Extended
BP	GO:0033259	plastid DNA replication	IMP	Interproscan
MF	GO:0034061	DNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	HCCA
BP	GO:0006783	heme biosynthetic process	IEP	HCCA
MF	GO:0009011	starch synthase activity	IEP	HCCA
CC	GO:0009527	plastid outer membrane	IEP	HCCA
CC	GO:0009707	chloroplast outer membrane	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0031425	chloroplast RNA processing	IEP	HCCA
CC	GO:0031969	chloroplast membrane	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0042168	heme metabolic process	IEP	HCCA
BP	GO:0045036	protein targeting to chloroplast	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA
BP	GO:0072596	establishment of protein localization to chloroplast	IEP	HCCA
BP	GO:0072598	protein localization to chloroplast	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002562	3'-5'_exonuclease_dom	312	490
IPR001098	DNA-dir_DNA_pol_A_palm_dom	717	1047

External Links

No external refs found!

AT1G50840 (POLGAMMA2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation