1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT1G50500

AT1G50500 (VPS53, HIT1, ATVPS53)


Aliases : VPS53, HIT1, ATVPS53

Description : Membrane trafficking VPS53 family protein


Gene families : OG0003936 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003936_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G50500
Cluster HCCA: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00092p00123760 VPS53, HIT1,... Vesicle trafficking.target membrane tethering.GARP/EARP... 0.02 OrthoFinder output from all 47 species
Adi_g013451 VPS53, HIT1, ATVPS53 component *(VPS53/HIT1) of GARP/EARP... 0.02 OrthoFinder output from all 47 species
Aev_g06143 VPS53, HIT1, ATVPS53 component *(VPS53/HIT1) of GARP/EARP... 0.05 OrthoFinder output from all 47 species
Ala_g31947 VPS53, HIT1, ATVPS53 component *(VPS53/HIT1) of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Als_g01928 VPS53, HIT1, ATVPS53 component *(VPS53/HIT1) of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Aob_g03573 VPS53, HIT1, ATVPS53 component *(VPS53/HIT1) of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Aop_g00781 VPS53, HIT1, ATVPS53 component *(VPS53/HIT1) of GARP/EARP... 0.05 OrthoFinder output from all 47 species
Azfi_s0010.g012081 VPS53, HIT1, ATVPS53 component *(VPS53/HIT1) of GARP/EARP... 0.08 OrthoFinder output from all 47 species
Ceric.34G024900.1 VPS53, HIT1,... component *(VPS53/HIT1) of GARP/EARP... 0.09 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020554.46 VPS53, HIT1, ATVPS53 Vesicle trafficking.target membrane tethering.GARP/EARP... 0.02 OrthoFinder output from all 47 species
Dcu_g22740 VPS53, HIT1, ATVPS53 component *(VPS53/HIT1) of GARP/EARP... 0.1 OrthoFinder output from all 47 species
Dde_g05918 VPS53, HIT1, ATVPS53 component *(VPS53/HIT1) of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Ehy_g01626 VPS53, HIT1, ATVPS53 component *(VPS53/HIT1) of GARP/EARP... 0.06 OrthoFinder output from all 47 species
GSVIVT01016094001 VPS53, HIT1, ATVPS53 Vesicle trafficking.target membrane tethering.GARP/EARP... 0.06 OrthoFinder output from all 47 species
LOC_Os01g67880.1 VPS53, HIT1,... component VPS53/HIT1 of GARP/EARP... 0.07 OrthoFinder output from all 47 species
Lfl_g04212 VPS53, HIT1, ATVPS53 component *(VPS53/HIT1) of GARP/EARP... 0.04 OrthoFinder output from all 47 species
Mp8g18200.1 VPS53, HIT1, ATVPS53 component VPS53/HIT1 of GARP/EARP... 0.07 OrthoFinder output from all 47 species
Ore_g16016 VPS53, HIT1, ATVPS53 component *(VPS53/HIT1) of GARP/EARP... 0.02 OrthoFinder output from all 47 species
Solyc04g049490.3.1 VPS53, HIT1,... component VPS53/HIT1 of GARP/EARP... 0.11 OrthoFinder output from all 47 species
Tin_g01215 VPS53, HIT1, ATVPS53 component *(VPS53/HIT1) of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Zm00001e018920_P001 VPS53, HIT1,... component VPS53/HIT1 of GARP/EARP... 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization RCA Interproscan
BP GO:0000911 cytokinesis by cell plate formation RCA Interproscan
MF GO:0005215 transporter activity ISS Interproscan
CC GO:0005739 mitochondrion IDA Interproscan
CC GO:0005886 plasma membrane ISM Interproscan
BP GO:0006810 transport ISS Interproscan
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum ISS Interproscan
BP GO:0006970 response to osmotic stress IMP Interproscan
BP GO:0009408 response to heat IMP Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000059 obsolete protein import into nucleus, docking IEP HCCA
CC GO:0000151 ubiquitin ligase complex IEP HCCA
BP GO:0000278 mitotic cell cycle IEP HCCA
CC GO:0000325 plant-type vacuole IEP HCCA
BP GO:0000902 cell morphogenesis IEP HCCA
BP GO:0000904 cell morphogenesis involved in differentiation IEP HCCA
BP GO:0000919 cell plate assembly IEP HCCA
MF GO:0005384 manganese ion transmembrane transporter activity IEP HCCA
MF GO:0005388 P-type calcium transporter activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005694 chromosome IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
CC GO:0005794 Golgi apparatus IEP HCCA
CC GO:0005829 cytosol IEP HCCA
CC GO:0005911 cell-cell junction IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006497 protein lipidation IEP HCCA
BP GO:0006505 GPI anchor metabolic process IEP HCCA
BP GO:0006506 GPI anchor biosynthetic process IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
BP GO:0006828 manganese ion transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0007021 tubulin complex assembly IEP HCCA
BP GO:0007049 cell cycle IEP HCCA
BP GO:0007051 spindle organization IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
BP GO:0008608 attachment of spindle microtubules to kinetochore IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
CC GO:0009506 plasmodesma IEP HCCA
BP GO:0009606 tropism IEP HCCA
BP GO:0009629 response to gravity IEP HCCA
BP GO:0009630 gravitropism IEP HCCA
BP GO:0009846 pollen germination IEP HCCA
BP GO:0010090 trichome morphogenesis IEP HCCA
CC GO:0012505 endomembrane system IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
MF GO:0015085 calcium ion transmembrane transporter activity IEP HCCA
MF GO:0015410 ABC-type manganese transporter activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0015662 P-type ion transporter activity IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019829 ATPase-coupled monoatomic cation transmembrane transporter activity IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
CC GO:0030054 cell junction IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
MF GO:0030276 clathrin binding IEP HCCA
CC GO:0031209 SCAR complex IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0046915 transition metal ion transmembrane transporter activity IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051177 meiotic sister chromatid cohesion IEP HCCA
BP GO:0051225 spindle assembly IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0051316 attachment of spindle microtubules to kinetochore involved in meiotic chromosome segregation IEP HCCA
BP GO:0051455 monopolar spindle attachment to meiosis I kinetochore IEP HCCA
BP GO:0051645 Golgi localization IEP HCCA
BP GO:0051646 mitochondrion localization IEP HCCA
BP GO:0051754 meiotic sister chromatid cohesion, centromeric IEP HCCA
BP GO:0055071 manganese ion homeostasis IEP HCCA
BP GO:0060151 peroxisome localization IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
CC GO:0070161 anchoring junction IEP HCCA
BP GO:0070601 centromeric sister chromatid cohesion IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
MF GO:0140358 P-type transmembrane transporter activity IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR007234 Vps53_N 2 424
No external refs found!