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AT1G50440


Description : RING/FYVE/PHD zinc finger superfamily protein


Gene families : OG0001516 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001516_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G50440

Target Alias Description ECC score Gene Family Method Actions
Ala_g06539 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os02g03950.3 LOC_Os02g03950 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os11g39130.1 LOC_Os11g39130 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Pnu_g12883 No alias E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0026.g009539 No alias E3 ubiquitin ligase & original description: CDS=89-1339 0.03 OrthoFinder output from all 47 species
Zm00001e020674_P003 Zm00001e020674 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm ISM Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
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Type GO Term Name Evidence Source
CC GO:0000813 ESCRT I complex IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006301 postreplication repair IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0010039 response to iron ion IEP HCCA
BP GO:0010053 root epidermal cell differentiation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
CC GO:0031371 ubiquitin conjugating enzyme complex IEP HCCA
CC GO:0031372 UBC13-MMS2 complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0036452 ESCRT complex IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0090627 plant epidermal cell differentiation IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR011016 Znf_RING-CH 64 111
No external refs found!