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  5. AT1G50020

AT1G50020


Description : unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 72 Blast hits to 72 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).


Gene families : OG0007122 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007122_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G50020

Target Alias Description ECC score Gene Family Method Actions
Aev_g14376 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Als_g11234 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g19840 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Aspi01Gene13893.t1 Aspi01Gene13893 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g11228 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01037044001 No alias No description available 0.05 OrthoFinder output from all 47 species
Gb_39920 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Len_g07636 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10429953g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g25018 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g09428 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g18139 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g08262 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g106790.3.1 Solyc01g106790 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Spa_g24615 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g43614 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e024587_P001 Zm00001e024587 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
BP GO:0008150 biological_process ND Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009507 chloroplast ISM Interproscan
CC GO:0009535 chloroplast thylakoid membrane IDA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006787 porphyrin-containing compound catabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008565 obsolete protein transporter activity IEP HCCA
BP GO:0009269 response to desiccation IEP HCCA
BP GO:0009661 chromoplast organization IEP HCCA
BP GO:0010264 myo-inositol hexakisphosphate biosynthetic process IEP HCCA
CC GO:0010287 plastoglobule IEP HCCA
BP GO:0015994 chlorophyll metabolic process IEP HCCA
BP GO:0015996 chlorophyll catabolic process IEP HCCA
BP GO:0016119 carotene metabolic process IEP HCCA
BP GO:0016120 carotene biosynthetic process IEP HCCA
MF GO:0016168 chlorophyll binding IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016706 2-oxoglutarate-dependent dioxygenase activity IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
CC GO:0030076 light-harvesting complex IEP HCCA
BP GO:0031279 regulation of cyclase activity IEP HCCA
BP GO:0031647 regulation of protein stability IEP HCCA
BP GO:0032958 inositol phosphate biosynthetic process IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033015 tetrapyrrole catabolic process IEP HCCA
BP GO:0033517 myo-inositol hexakisphosphate metabolic process IEP HCCA
MF GO:0033743 peptide-methionine (R)-S-oxide reductase activity IEP HCCA
BP GO:0042214 terpene metabolic process IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
BP GO:0043647 inositol phosphate metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046149 pigment catabolic process IEP HCCA
BP GO:0046173 polyol biosynthetic process IEP HCCA
BP GO:0046246 terpene biosynthetic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
BP GO:0050821 protein stabilization IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
BP GO:1902171 regulation of tocopherol cyclase activity IEP HCCA

No InterPro domains available for this sequence

No external refs found!