AT1G48830

Description : Ribosomal protein S7e family protein

Gene families : OG0001505 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001505_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G48830

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00017p00257730	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
Ala_g21941	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ala_g36863	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Als_g27864	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Als_g36971	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Aob_g00804	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0028.g023989	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ceric.32G072400.1	Ceric.32G072400	component *(eS7) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ceric.35G018000.1	Ceric.35G018000	component *(eS7) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021682.9	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	OrthoFinder output from all 47 species
Cre12.g498900	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.07	OrthoFinder output from all 47 species
GSVIVT01008307001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
GSVIVT01031018001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.05	OrthoFinder output from all 47 species
LOC_Os03g18570.1	LOC_Os03g18570	component RPS7 of SSU proteome	0.06	OrthoFinder output from all 47 species
LOC_Os03g18580.1	LOC_Os03g18580	component RPS7 of SSU proteome	0.05	OrthoFinder output from all 47 species
LOC_Os05g27940.1	LOC_Os05g27940	component RPS7 of SSU proteome	0.04	OrthoFinder output from all 47 species
Len_g31152	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Lfl_g00395	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
MA_52277g0010	No alias	component RPS7 of SSU proteome	0.03	OrthoFinder output from all 47 species
Mp6g08120.1	No alias	component RPS7 of SSU proteome	0.03	OrthoFinder output from all 47 species
Nbi_g01754	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Pp3c20_1360V3.1	Pp3c20_1360	Ribosomal protein S7e family protein	0.04	OrthoFinder output from all 47 species
Pp3c24_18220V3.1	Pp3c24_18220	Ribosomal protein S7e family protein	0.03	OrthoFinder output from all 47 species
Pp3c8_22480V3.1	Pp3c8_22480	Ribosomal protein S7e family protein	0.04	OrthoFinder output from all 47 species
Ppi_g46098	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Sam_g13288	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Solyc03g119360.3.1	Solyc03g119360	component RPS7 of SSU proteome	0.04	OrthoFinder output from all 47 species
Solyc06g069090.3.1	Solyc06g069090	component RPS7 of SSU proteome	0.08	OrthoFinder output from all 47 species
Spa_g16479	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Spa_g22409	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Tin_g02457	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Zm00001e001349_P002	Zm00001e001349	component RPS7 of SSU proteome	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005618	cell wall	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005840	ribosome	None	Extended
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IBA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015935	small ribosomal subunit	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022613	ribonucleoprotein complex biogenesis	None	Extended
CC	GO:0022626	cytosolic ribosome	IDA	Interproscan
CC	GO:0022627	cytosolic small ribosomal subunit	IDA	Interproscan
CC	GO:0022627	cytosolic small ribosomal subunit	ISS	Interproscan
CC	GO:0030312	external encapsulating structure	None	Extended
CC	GO:0030684	preribosome	None	Extended
CC	GO:0030686	90S preribosome	IBA	Interproscan
CC	GO:0032040	small-subunit processome	IBA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0042274	ribosomal small subunit biogenesis	IBA	Interproscan
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005732	sno(s)RNA-containing ribonucleoprotein complex	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000554	Ribosomal_S7e	7	187

External Links

No external refs found!

AT1G48830

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation