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AT1G48650


Description : DEA(D/H)-box RNA helicase family protein


Gene families : OG0000629 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000629_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G48650
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AT5G04895 No alias DEA(D/H)-box RNA helicase family protein 0.03 OrthoFinder output from all 47 species
Adi_g021909 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g29313 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0022.g015910 No alias not classified & original description: CDS=1-1104 0.09 OrthoFinder output from all 47 species
Azfi_s0022.g015912 No alias not classified & original description: CDS=1-2058 0.06 OrthoFinder output from all 47 species
Cba_g14820 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g21782 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.06G015600.1 Ceric.06G015600 not classified & original description: pacid=50620151... 0.03 OrthoFinder output from all 47 species
Ceric.23G070100.1 Ceric.23G070100 not classified & original description: pacid=50609964... 0.04 OrthoFinder output from all 47 species
Dcu_g44577 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g09821 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008365001 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana 0.1 OrthoFinder output from all 47 species
GSVIVT01034780001 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_40990 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Len_g19148 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g47532 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g02413 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g18805 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_10437209g0010 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
MA_22839g0010 No alias DExH-box ATP-dependent RNA helicase DExH5, mitochondrial... 0.03 OrthoFinder output from all 47 species
Mp8g13160.1 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Ore_g10298 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g07185 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g14582 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo419303 No alias Protein biosynthesis.aminoacyl-tRNA synthetase... 0.03 OrthoFinder output from all 47 species
Solyc03g118920.3.1 Solyc03g118920 DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
Solyc04g007510.4.1 Solyc04g007510 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISS Interproscan
MF GO:0004386 helicase activity ISS Interproscan
MF GO:0005524 ATP binding ISS Interproscan
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Type GO Term Name Evidence Source
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0004072 aspartate kinase activity IEP HCCA
MF GO:0004412 homoserine dehydrogenase activity IEP HCCA
MF GO:0004871 obsolete signal transducer activity IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0005834 heterotrimeric G-protein complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006264 mitochondrial DNA replication IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006783 heme biosynthetic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009527 plastid outer membrane IEP HCCA
CC GO:0009532 plastid stroma IEP HCCA
CC GO:0009536 plastid IEP HCCA
CC GO:0009570 chloroplast stroma IEP HCCA
CC GO:0009707 chloroplast outer membrane IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010099 regulation of photomorphogenesis IEP HCCA
BP GO:0010100 negative regulation of photomorphogenesis IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
MF GO:0019202 amino acid kinase activity IEP HCCA
BP GO:0031425 chloroplast RNA processing IEP HCCA
CC GO:0031969 chloroplast membrane IEP HCCA
BP GO:0032042 mitochondrial DNA metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0033258 plastid DNA metabolic process IEP HCCA
BP GO:0033259 plastid DNA replication IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0042168 heme metabolic process IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0045036 protein targeting to chloroplast IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048581 negative regulation of post-embryonic development IEP HCCA
BP GO:0051093 negative regulation of developmental process IEP HCCA
BP GO:0051241 negative regulation of multicellular organismal process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0072596 establishment of protein localization to chloroplast IEP HCCA
BP GO:0072598 protein localization to chloroplast IEP HCCA
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1905360 GTPase complex IEP HCCA
BP GO:2000030 regulation of response to red or far red light IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 309 460
IPR001650 Helicase_C 569 697
IPR014720 dsRBD_dom 1102 1163
IPR011709 DEAD-box_helicase_OB_fold 916 998
IPR007502 Helicase-assoc_dom 761 850
No external refs found!