AT1G48240 (NPSN12, ATNPSN12)

Aliases : NPSN12, ATNPSN12

Description : novel plant snare 12

Gene families : OG0002530 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002530_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G48240

Target	Alias	Description	ECC score	Gene Family Method
Adi_g108233	NPSN13, ATNPSN13	Qb-type NPSN-group component of SNARE membrane fusion...	0.02	OrthoFinder output from all 47 species
Aev_g24174	NPSN13, ATNPSN13	Qb-type NPSN-group component of SNARE membrane fusion...	0.02	OrthoFinder output from all 47 species
Ceric.35G009000.1	NPSN13,...	Qb-type NPSN-group component of SNARE membrane fusion...	0.05	OrthoFinder output from all 47 species
Dcu_g04410	NPSN13, ATNPSN13	Qb-type NPSN-group component of SNARE membrane fusion...	0.02	OrthoFinder output from all 47 species
Ehy_g06550	NPSN12, ATNPSN12	Qb-type NPSN-group component of SNARE membrane fusion...	0.03	OrthoFinder output from all 47 species
Ehy_g07332	NPSN13, ATNPSN13	Qb-type NPSN-group component of SNARE membrane fusion...	0.02	OrthoFinder output from all 47 species
LOC_Os07g44350.1	NPSN13,...	NPSN group Qb-type SNARE protein	0.03	OrthoFinder output from all 47 species
MA_102436g0010	NPSN12, ATNPSN12	NPSN group Qb-type SNARE protein	0.03	OrthoFinder output from all 47 species
Nbi_g05218	NPSN13, ATNPSN13	Qb-type NPSN-group component of SNARE membrane fusion...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005886	plasma membrane	IDA	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008565	obsolete protein transporter activity	ISS	Interproscan
CC	GO:0009506	plasmodesma	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
CC	GO:0016020	membrane	ISS	Interproscan
BP	GO:0016192	vesicle-mediated transport	RCA	Interproscan
CC	GO:0030054	cell junction	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000226	microtubule cytoskeleton organization	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
BP	GO:0007015	actin filament organization	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0009411	response to UV	IEP	HCCA
BP	GO:0009825	multidimensional cell growth	IEP	HCCA
BP	GO:0009860	pollen tube growth	IEP	HCCA
BP	GO:0009932	cell tip growth	IEP	HCCA
BP	GO:0010119	regulation of stomatal movement	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0043473	pigmentation	IEP	HCCA
BP	GO:0043476	pigment accumulation	IEP	HCCA
BP	GO:0043478	pigment accumulation in response to UV light	IEP	HCCA
BP	GO:0043479	pigment accumulation in tissues in response to UV light	IEP	HCCA
BP	GO:0043480	pigment accumulation in tissues	IEP	HCCA
BP	GO:0043481	anthocyanin accumulation in tissues in response to UV light	IEP	HCCA
BP	GO:0048767	root hair elongation	IEP	HCCA
BP	GO:0097435	supramolecular fiber organization	IEP	HCCA

No InterPro domains available for this sequence

External Links

No external refs found!