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AT1G47500 (ATRBP47C', RBP47C')


Aliases : ATRBP47C', RBP47C'

Description : RNA-binding protein 47C'


Gene families : OG0000531 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000531_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G47500

Target Alias Description ECC score Gene Family Method Actions
Cba_g05169 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Gb_07135 No alias mRNA-binding regulatory factor (RBP45/47) 0.04 OrthoFinder output from all 47 species
LOC_Os08g09100.1 RBP45B,... mRNA-binding regulatory factor (RBP45/47) 0.06 OrthoFinder output from all 47 species
Zm00001e012505_P001 ATRBP45A,... mRNA-binding regulatory factor (RBP45/47) 0.15 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISS Interproscan
CC GO:0005634 nucleus ISS Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
MF GO:0008143 poly(A) binding ISS Interproscan
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Type GO Term Name Evidence Source
CC GO:0005618 cell wall IEP HCCA
CC GO:0005911 cell-cell junction IEP HCCA
CC GO:0009505 plant-type cell wall IEP HCCA
CC GO:0009506 plasmodesma IEP HCCA
CC GO:0030054 cell junction IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
CC GO:0070161 anchoring junction IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 201 270
IPR000504 RRM_dom 105 173
IPR000504 RRM_dom 308 372
No external refs found!