AT1G47490 (ATRBP47C, RBP47C)

Aliases : ATRBP47C, RBP47C

Description : RNA-binding protein 47C

Gene families : OG0000531 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000531_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G47490
Cluster	HCCA: Cluster_158

Target	Alias	Description	ECC score	Gene Family Method
AT3G19130	ATRBP47B, RBP47B	RNA-binding protein 47B	0.03	OrthoFinder output from all 47 species
Adi_g084405	No alias	regulatory factor *(RBP45/47) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Ala_g09913	No alias	regulatory factor *(RBP45/47) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Aspi01Gene10070.t1	ATRBP47B,...	regulatory factor *(RBP45/47) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Cba_g32292	No alias	regulatory factor *(RBP45/47) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Cba_g59919	No alias	regulatory factor *(RBP45/47) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Sam_g39348	No alias	regulatory factor *(RBP45/47) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Solyc02g080420.4.1	ATRBP45C, Solyc02g080420	mRNA-binding regulatory factor (RBP45/47)	0.02	OrthoFinder output from all 47 species
Solyc07g064510.3.1	ATRBP45C, Solyc07g064510	mRNA-binding regulatory factor (RBP45/47)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISS	Interproscan
MF	GO:0003727	single-stranded RNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005737	cytoplasm	ISM	Interproscan
MF	GO:0008143	poly(A) binding	ISS	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0070717	poly-purine tract binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	199	268
IPR000504	RRM_dom	103	172
IPR000504	RRM_dom	306	370

External Links

No external refs found!