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  5. AT1G47056

AT1G47056 (VFB1)


Aliases : VFB1

Description : VIER F-box proteine 1


Gene families : OG0001029 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001029_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G47056

Target Alias Description ECC score Gene Family Method Actions
Adi_g087868 VFB4, SKIP2 substrate adaptor *(VFB) of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Ehy_g26253 VFB4, SKIP2 substrate adaptor *(VFB) of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Ehy_g30738 VFB4, SKIP2 substrate adaptor *(VFB) of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012208 VFB1 substrate adaptor *(VFB) of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Solyc02g092990.1.1 VFB4, SKIP2,... component FBX of SCF E3 ubiquitin ligase complex 0.03 OrthoFinder output from all 47 species
Solyc04g078490.1.1 VFB3, Solyc04g078490 component FBX of SCF E3 ubiquitin ligase complex 0.03 OrthoFinder output from all 47 species
Zm00001e033486_P001 VFB1, Zm00001e033486 component FBX of SCF E3 ubiquitin ligase complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
MF GO:0005351 carbohydrate:proton symporter activity IEP HCCA
MF GO:0005402 carbohydrate:monoatomic cation symporter activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006623 protein targeting to vacuole IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015144 carbohydrate transmembrane transporter activity IEP HCCA
MF GO:0015293 symporter activity IEP HCCA
MF GO:0015294 solute:monoatomic cation symporter activity IEP HCCA
MF GO:0015295 solute:proton symporter activity IEP HCCA
BP GO:0015706 nitrate transmembrane transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072665 protein localization to vacuole IEP HCCA
BP GO:0072666 establishment of protein localization to vacuole IEP HCCA
BP GO:0098661 inorganic anion transmembrane transport IEP HCCA
BP GO:1902025 nitrate import IEP HCCA
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 129 152
IPR001810 F-box_dom 40 71
No external refs found!