AT1G32490 (ESP3, EMB2733)

Aliases : ESP3, EMB2733

Description : RNA helicase family protein

Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G32490

Target	Alias	Description	ECC score	Gene Family Method
Aev_g11422	No alias	RNA helicase *(Prp22) & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g11071	No alias	RNA helicase Prp43 of Intron-Lariat Spliceosome complex...	0.02	OrthoFinder output from all 47 species
Aop_g13922	EMB3011	RNA helicase *(Prp16) & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g13014	EMB3011	RNA helicase *(Prp16) & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.01G059500.1	Ceric.01G059500	not classified & original description: pacid=50591809...	0.06	OrthoFinder output from all 47 species
Ceric.04G078700.1	Ceric.04G078700	not classified & original description: pacid=50630845...	0.02	OrthoFinder output from all 47 species
Ceric.21G075900.1	EMB3011, Ceric.21G075900	RNA helicase *(Prp16) & original description:...	0.05	OrthoFinder output from all 47 species
Ceric.37G064800.1	ESP3, EMB2733,...	RNA helicase *(Prp2) & original description:...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020531.53	EMB3011	Pre-mRNA-splicing factor ATP-dependent RNA helicase...	0.02	OrthoFinder output from all 47 species
Cre07.g349100	ESP3, EMB2733	RNA processing.RNA splicing.spliceosome...	0.03	OrthoFinder output from all 47 species
Dcu_g20664	No alias	RNA helicase Prp43 of Intron-Lariat Spliceosome complex...	0.03	OrthoFinder output from all 47 species
Dcu_g22478	EMB3011	RNA helicase *(Prp16) & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g42294	No alias	RNA helicase Prp43 of Intron-Lariat Spliceosome complex...	0.03	OrthoFinder output from all 47 species
GSVIVT01007911001	ESP3, EMB2733	Pre-mRNA-splicing factor ATP-dependent RNA helicase...	0.04	OrthoFinder output from all 47 species
GSVIVT01028153001	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.04	OrthoFinder output from all 47 species
GSVIVT01029863001	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.04	OrthoFinder output from all 47 species
Gb_11931	No alias	RNA helicase (Prp22)	0.03	OrthoFinder output from all 47 species
Gb_30670	No alias	helicase Prp43 of Intron-Lariat Spliceosome complex	0.02	OrthoFinder output from all 47 species
LOC_Os02g19860.1	LOC_Os02g19860	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.04	OrthoFinder output from all 47 species
LOC_Os08g24760.1	ESP3, EMB2733,...	RNA helicase (Prp2)	0.04	OrthoFinder output from all 47 species
MA_10435486g0020	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.03	OrthoFinder output from all 47 species
MA_629782g0010	EMB3011	Pre-mRNA-splicing factor ATP-dependent RNA helicase...	0.03	OrthoFinder output from all 47 species
Mp2g13680.1	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.03	OrthoFinder output from all 47 species
Mp7g03460.1	EMB3011	RNA helicase (Prp16)	0.02	OrthoFinder output from all 47 species
Ore_g36696	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g42980	EMB3011	RNA helicase *(Prp16) & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g04698	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g05341	EMB3011	RNA helicase *(Prp16) & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001017	No alias	RNA helicase Prp43 of Intron-Lariat Spliceosome complex...	0.02	OrthoFinder output from all 47 species
Sam_g14599	No alias	RNA helicase *(Prp16) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g16823	No alias	RNA helicase Prp43 of Intron-Lariat Spliceosome complex...	0.02	OrthoFinder output from all 47 species
Sam_g25079	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g29503	No alias	RNA helicase *(Prp22) & original description: none	0.02	OrthoFinder output from all 47 species
Solyc03g115390.4.1	ESP3, EMB2733,...	RNA helicase (Prp2)	0.04	OrthoFinder output from all 47 species
Solyc07g039550.4.1	Solyc07g039550	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.04	OrthoFinder output from all 47 species
Tin_g01282	EMB3011	RNA helicase *(Prp16) & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e010450_P001	EMB3011, Zm00001e010450	RNA helicase (Prp16)	0.03	OrthoFinder output from all 47 species
Zm00001e014112_P001	Zm00001e014112	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.04	OrthoFinder output from all 47 species
Zm00001e022095_P001	ESP3, EMB2733,...	RNA helicase (Prp2)	0.03	OrthoFinder output from all 47 species
Zm00001e036358_P005	Zm00001e036358	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0002376	immune system process	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006304	DNA modification	None	Extended
BP	GO:0006305	DNA alkylation	None	Extended
BP	GO:0006306	DNA methylation	RCA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0006955	immune response	None	Extended
BP	GO:0007154	cell communication	None	Extended
BP	GO:0007267	cell-cell signaling	RCA	Interproscan
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	NAS	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009615	response to virus	None	Extended
BP	GO:0009616	RNAi-mediated antiviral immune response	RCA	Interproscan
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	NAS	Interproscan
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010267	ta-siRNA processing	RCA	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010608	post-transcriptional regulation of gene expression	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016441	post-transcriptional gene silencing	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0023052	signaling	None	Extended
BP	GO:0030422	siRNA processing	None	Extended
BP	GO:0031047	RNA-mediated gene silencing	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0035194	RNA-mediated post-transcriptional gene silencing	IMP	Interproscan
BP	GO:0035196	miRNA processing	RCA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0044728	DNA methylation or demethylation	None	Extended
BP	GO:0045087	innate immune response	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051607	defense response to virus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070918	regulatory ncRNA processing	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140546	defense response to symbiont	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000059	obsolete protein import into nucleus, docking	IEP	HCCA
BP	GO:0001709	cell fate determination	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0004806	triglyceride lipase activity	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
CC	GO:0005677	chromatin silencing complex	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
BP	GO:0005976	polysaccharide metabolic process	IEP	HCCA
BP	GO:0006270	DNA replication initiation	IEP	HCCA
BP	GO:0006312	mitotic recombination	IEP	HCCA
BP	GO:0006349	regulation of gene expression by genomic imprinting	IEP	HCCA
BP	GO:0006405	RNA export from nucleus	IEP	HCCA
BP	GO:0006406	mRNA export from nucleus	IEP	HCCA
BP	GO:0006875	cellular metal ion homeostasis	IEP	HCCA
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0006891	intra-Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
BP	GO:0008284	positive regulation of cell population proliferation	IEP	HCCA
MF	GO:0008565	obsolete protein transporter activity	IEP	HCCA
BP	GO:0009266	response to temperature stimulus	IEP	HCCA
BP	GO:0009409	response to cold	IEP	HCCA
BP	GO:0009846	pollen germination	IEP	HCCA
BP	GO:0009909	regulation of flower development	IEP	HCCA
BP	GO:0009910	negative regulation of flower development	IEP	HCCA
BP	GO:0010048	vernalization response	IEP	HCCA
BP	GO:0010073	meristem maintenance	IEP	HCCA
BP	GO:0010074	maintenance of meristem identity	IEP	HCCA
BP	GO:0010152	pollen maturation	IEP	HCCA
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IEP	HCCA
BP	GO:0010383	cell wall polysaccharide metabolic process	IEP	HCCA
BP	GO:0010393	galacturonan metabolic process	IEP	HCCA
BP	GO:0019827	stem cell population maintenance	IEP	HCCA
MF	GO:0019829	ATPase-coupled monoatomic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0034406	cell wall beta-glucan metabolic process	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	HCCA
BP	GO:0045488	pectin metabolic process	IEP	HCCA
BP	GO:0045787	positive regulation of cell cycle	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0048580	regulation of post-embryonic development	IEP	HCCA
BP	GO:0048581	negative regulation of post-embryonic development	IEP	HCCA
BP	GO:0048831	regulation of shoot system development	IEP	HCCA
BP	GO:0048867	stem cell fate determination	IEP	HCCA
BP	GO:0050657	nucleic acid transport	IEP	HCCA
BP	GO:0050658	RNA transport	IEP	HCCA
BP	GO:0051028	mRNA transport	IEP	HCCA
BP	GO:0051168	nuclear export	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051236	establishment of RNA localization	IEP	HCCA
BP	GO:0051239	regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051241	negative regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051302	regulation of cell division	IEP	HCCA
BP	GO:0051445	regulation of meiotic cell cycle	IEP	HCCA
BP	GO:0051446	positive regulation of meiotic cell cycle	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0052541	plant-type cell wall cellulose metabolic process	IEP	HCCA
BP	GO:0052546	cell wall pectin metabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
BP	GO:0098727	maintenance of cell number	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:2000026	regulation of multicellular organismal development	IEP	HCCA
BP	GO:2000241	regulation of reproductive process	IEP	HCCA
BP	GO:2000242	negative regulation of reproductive process	IEP	HCCA
BP	GO:2000243	positive regulation of reproductive process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011709	DEAD-box_helicase_OB_fold	944	1021
IPR007502	Helicase-assoc_dom	796	871
IPR001650	Helicase_C	604	733

External Links

No external refs found!

AT1G32490 (ESP3, EMB2733)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation