Gb_38048


Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 184.0)


Gene families : OG_01_0000364 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000364_tree ,
OG_02_0000134 (LandPlants) Phylogenetic Tree(s): OG_02_0000134_tree ,
OG_03_0000108 (SeedPlants) Phylogenetic Tree(s): OG_03_0000108_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_38048
Cluster HCCA: Cluster_200

Target Alias Description ECC score Gene Family Method Actions
Gb_00288 No alias no hits & (original description: none) 0.04 Archaeplastida
Gb_00311 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 Archaeplastida
Gb_01729 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 Archaeplastida
Gb_06034 No alias no hits & (original description: none) 0.07 Archaeplastida
Gb_06978 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 Archaeplastida
Gb_09514 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.09 Archaeplastida
Gb_10464 No alias no hits & (original description: none) 0.06 Archaeplastida
Gb_10876 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.1 Archaeplastida
Gb_16799 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 Archaeplastida
Gb_20056 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 Archaeplastida
Gb_21118 No alias no hits & (original description: none) 0.05 Archaeplastida
Gb_22414 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.23 Archaeplastida
Gb_23548 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_24597 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 Archaeplastida
Gb_25092 No alias no hits & (original description: none) 0.08 Archaeplastida
Gb_26269 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.14 Archaeplastida
Gb_26878 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 Archaeplastida
Gb_26975 No alias no hits & (original description: none) 0.05 Archaeplastida
Gb_27233 No alias no hits & (original description: none) 0.17 Archaeplastida
Gb_27666 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.1 Archaeplastida
Gb_28622 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.08 Archaeplastida
Gb_29350 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 Archaeplastida
Gb_29919 No alias no hits & (original description: none) 0.15 Archaeplastida
Gb_30317 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.09 Archaeplastida
Gb_33182 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 Archaeplastida
Gb_33414 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 Archaeplastida
Gb_33497 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_34085 No alias no hits & (original description: none) 0.05 Archaeplastida
Gb_37666 No alias no hits & (original description: none) 0.06 Archaeplastida
Gb_38122 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 Archaeplastida
Gb_40384 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_40853 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 Archaeplastida
Gb_41697 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 Archaeplastida
Gb_00288 No alias no hits & (original description: none) 0.05 LandPlants
Gb_00311 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 LandPlants
Gb_01729 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 LandPlants
Gb_03181 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 LandPlants
Gb_06034 No alias no hits & (original description: none) 0.07 LandPlants
Gb_06223 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 LandPlants
Gb_06978 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 LandPlants
Gb_08402 No alias no hits & (original description: none) 0.06 LandPlants
Gb_09514 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.08 LandPlants
Gb_10464 No alias no hits & (original description: none) 0.06 LandPlants
Gb_10876 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 LandPlants
Gb_13320 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 LandPlants
Gb_13701 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 LandPlants
Gb_15820 No alias no hits & (original description: none) 0.04 LandPlants
Gb_16799 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 LandPlants
Gb_20056 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 LandPlants
Gb_21118 No alias no hits & (original description: none) 0.05 LandPlants
Gb_22414 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.24 LandPlants
Gb_23548 No alias no hits & (original description: none) 0.04 LandPlants
Gb_24597 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 LandPlants
Gb_25092 No alias no hits & (original description: none) 0.08 LandPlants
Gb_25323 No alias no hits & (original description: none) 0.03 LandPlants
Gb_26269 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.15 LandPlants
Gb_26718 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 LandPlants
Gb_26878 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 LandPlants
Gb_26975 No alias no hits & (original description: none) 0.05 LandPlants
Gb_27233 No alias no hits & (original description: none) 0.18 LandPlants
Gb_27666 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.1 LandPlants
Gb_28622 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.08 LandPlants
Gb_29350 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 LandPlants
Gb_29546 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 LandPlants
Gb_29919 No alias no hits & (original description: none) 0.15 LandPlants
Gb_30314 No alias no hits & (original description: none) 0.04 LandPlants
Gb_30317 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.14 LandPlants
Gb_33182 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 LandPlants
Gb_33365 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 LandPlants
Gb_33414 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 LandPlants
Gb_33497 No alias no hits & (original description: none) 0.03 LandPlants
Gb_36579 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 LandPlants
Gb_37666 No alias no hits & (original description: none) 0.06 LandPlants
Gb_38122 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 LandPlants
Gb_38136 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 LandPlants
Gb_40384 No alias no hits & (original description: none) 0.03 LandPlants
Gb_40853 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.12 LandPlants
Gb_41697 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 LandPlants
ATMG00710 ORF120 Polynucleotidyl transferase, ribonuclease H-like... 0.02 SeedPlants
Gb_00288 No alias no hits & (original description: none) 0.05 SeedPlants
Gb_00311 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 SeedPlants
Gb_01729 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 SeedPlants
Gb_03181 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 SeedPlants
Gb_06034 No alias no hits & (original description: none) 0.07 SeedPlants
Gb_06223 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 SeedPlants
Gb_06978 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 SeedPlants
Gb_08402 No alias no hits & (original description: none) 0.06 SeedPlants
Gb_09514 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.08 SeedPlants
Gb_10464 No alias no hits & (original description: none) 0.06 SeedPlants
Gb_10876 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 SeedPlants
Gb_13320 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 SeedPlants
Gb_13701 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 SeedPlants
Gb_15074 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 SeedPlants
Gb_15820 No alias no hits & (original description: none) 0.04 SeedPlants
Gb_16799 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 SeedPlants
Gb_18335 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.04 SeedPlants
Gb_20056 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 SeedPlants
Gb_21118 No alias no hits & (original description: none) 0.05 SeedPlants
Gb_22414 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.24 SeedPlants
Gb_23548 No alias no hits & (original description: none) 0.04 SeedPlants
Gb_24597 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 SeedPlants
Gb_25092 No alias no hits & (original description: none) 0.08 SeedPlants
Gb_26269 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.15 SeedPlants
Gb_26718 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 SeedPlants
Gb_26878 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 SeedPlants
Gb_26975 No alias no hits & (original description: none) 0.05 SeedPlants
Gb_27233 No alias no hits & (original description: none) 0.18 SeedPlants
Gb_27666 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.1 SeedPlants
Gb_28622 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.08 SeedPlants
Gb_29350 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 SeedPlants
Gb_29546 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 SeedPlants
Gb_29919 No alias no hits & (original description: none) 0.15 SeedPlants
Gb_30314 No alias no hits & (original description: none) 0.04 SeedPlants
Gb_30317 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.14 SeedPlants
Gb_33365 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 SeedPlants
Gb_33414 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 SeedPlants
Gb_33497 No alias no hits & (original description: none) 0.03 SeedPlants
Gb_36579 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 SeedPlants
Gb_37666 No alias no hits & (original description: none) 0.06 SeedPlants
Gb_38122 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 SeedPlants
Gb_38136 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 SeedPlants
Gb_40384 No alias no hits & (original description: none) 0.03 SeedPlants
Gb_40853 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.12 SeedPlants
Gb_41697 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 SeedPlants

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR025724 GAG-pre-integrase_dom 135 186
IPR001584 Integrase_cat-core 200 315
No external refs found!