AT1G28130 (GH3.17)

Aliases : GH3.17

Description : Auxin-responsive GH3 family protein

Gene families : OG0000376 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000376_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G28130
Cluster	HCCA: Cluster_57

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00043p00208540	DFL1, GH3.6,...	Phytohormones.auxin.conjugation and...	0.05	OrthoFinder output from all 47 species
AMTR_s00045p00199760	GH3.9,...	Putative indole-3-acetic acid-amido synthetase GH3.9...	0.04	OrthoFinder output from all 47 species
AT2G23170	GH3.3	Auxin-responsive GH3 family protein	0.09	OrthoFinder output from all 47 species
AT4G27260	GH3.5, WES1	Auxin-responsive GH3 family protein	0.04	OrthoFinder output from all 47 species
AT4G37390	YDK1, AUR3,...	Auxin-responsive GH3 family protein	0.04	OrthoFinder output from all 47 species
AT5G13380	No alias	Auxin-responsive GH3 family protein	0.07	OrthoFinder output from all 47 species
AT5G51470	No alias	Auxin-responsive GH3 family protein	0.03	OrthoFinder output from all 47 species
Ala_g24399	GH3.5, WES1	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g46633	GH3.5, WES1	indole-3-acetic acid-amido synthetase *(GH3) & original...	0.04	OrthoFinder output from all 47 species
Aob_g32269	GH3.5, WES1	indole-3-acetic acid-amido synthetase *(GH3) & original...	0.02	OrthoFinder output from all 47 species
Aspi01Gene00423.t1	GH3.5, WES1,...	indole-3-acetic acid-amido synthetase *(GH3) & original...	0.05	OrthoFinder output from all 47 species
Aspi01Gene00424.t1	GH3.5, WES1,...	indole-3-acetic acid-amido synthetase *(GH3) & original...	0.05	OrthoFinder output from all 47 species
Aspi01Gene00425.t1	GH3.5, WES1,...	indole-3-acetic acid-amido synthetase *(GH3) & original...	0.05	OrthoFinder output from all 47 species
Aspi01Gene00426.t1	GH3.5, WES1,...	indole-3-acetic acid-amido synthetase *(GH3) & original...	0.05	OrthoFinder output from all 47 species
Aspi01Gene06626.t1	GH3.5, WES1,...	indole-3-acetic acid-amido synthetase *(GH3) & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene06627.t1	GH3.5, WES1,...	indole-3-acetic acid-amido synthetase *(GH3) & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene33576.t1	DFL1, GH3.6,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g13963	GH3.5, WES1	indole-3-acetic acid-amido synthetase *(GH3) & original...	0.02	OrthoFinder output from all 47 species
Dac_g34704	GH3.5, WES1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g44438	GH3.1	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dac_g46157	DFL1, GH3.6	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g25677	GH3.5, WES1	indole-3-acetic acid-amido synthetase *(GH3) & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01000176001	GH3.1	Probable indole-3-acetic acid-amido synthetase GH3.1...	0.04	OrthoFinder output from all 47 species
GSVIVT01027971001	GH3.9	Putative indole-3-acetic acid-amido synthetase GH3.9...	0.04	OrthoFinder output from all 47 species
Gb_04369	No alias	indole-3-acetic acid-amido synthetase	0.03	OrthoFinder output from all 47 species
Gb_06148	GH3.17	Indole-3-acetic acid-amido synthetase GH3.17...	0.04	OrthoFinder output from all 47 species
Gb_07002	GH3.5, WES1	Indole-3-acetic acid-amido synthetase GH3.5...	0.03	OrthoFinder output from all 47 species
Gb_23805	DFL1, GH3.6	Indole-3-acetic acid-amido synthetase GH3.5...	0.03	OrthoFinder output from all 47 species
Gb_31649	GH3.5, WES1	Indole-3-acetic acid-amido synthetase GH3.5...	0.03	OrthoFinder output from all 47 species
Gb_31650	GH3.5, WES1	Indole-3-acetic acid-amido synthetase GH3.5...	0.03	OrthoFinder output from all 47 species
Gb_36596	GH3.17	Indole-3-acetic acid-amido synthetase GH3.17...	0.07	OrthoFinder output from all 47 species
LOC_Os11g32510.1	GH3.17, LOC_Os11g32510	Indole-3-acetic acid-amido synthetase GH3.17...	0.05	OrthoFinder output from all 47 species
MA_100975g0010	DFL1, GH3.6	Indole-3-acetic acid-amido synthetase GH3.6...	0.04	OrthoFinder output from all 47 species
MA_10432413g0020	DFL1, GH3.6	Indole-3-acetic acid-amido synthetase GH3.6...	0.02	OrthoFinder output from all 47 species
MA_10434772g0010	DFL1, GH3.6	indole-3-acetic acid-amido synthetase	0.04	OrthoFinder output from all 47 species
MA_393345g0010	DFL1, GH3.6	Probable indole-3-acetic acid-amido synthetase GH3.1...	0.02	OrthoFinder output from all 47 species
Mp6g07600.1	DFL1, GH3.6	Probable indole-3-acetic acid-amido synthetase GH3.8...	0.03	OrthoFinder output from all 47 species
Msp_g42821	GH3.1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g12387	GH3.5, WES1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001444	GH3.5, WES1	not classified & original description: CDS=1-2121	0.03	OrthoFinder output from all 47 species
Solyc02g064830.4.1	GH3.1, Solyc02g064830	indole-3-acetic acid-amido synthetase	0.04	OrthoFinder output from all 47 species
Solyc02g092820.4.1	GH3.1, Solyc02g092820	indole-3-acetic acid-amido synthetase	0.03	OrthoFinder output from all 47 species
Solyc10g006610.4.1	DFL1, GH3.6,...	Indole-3-acetic acid-amido synthetase GH3.6...	0.03	OrthoFinder output from all 47 species
Spa_g04100	GH3.17	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g06910	GH3.5, WES1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g08993	GH3.5, WES1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e011159_P002	GH3.17, Zm00001e011159	Indole-3-acetic acid-amido synthetase GH3.17...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005737	cytoplasm	IDA	Interproscan
CC	GO:0005737	cytoplasm	ISM	Interproscan
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006694	steroid biosynthetic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008202	steroid metabolic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009733	response to auxin	IMP	Interproscan
BP	GO:0009733	response to auxin	ISS	Interproscan
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010252	auxin homeostasis	TAS	Interproscan
MF	GO:0010279	indole-3-acetic acid amido synthetase activity	IDA	Interproscan
BP	GO:0010817	regulation of hormone levels	None	Extended
BP	GO:0016128	phytosteroid metabolic process	None	Extended
BP	GO:0016129	phytosteroid biosynthetic process	None	Extended
BP	GO:0016131	brassinosteroid metabolic process	None	Extended
BP	GO:0016132	brassinosteroid biosynthetic process	RCA	Interproscan
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	None	Extended
MF	GO:0016881	acid-amino acid ligase activity	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042445	hormone metabolic process	None	Extended
BP	GO:0042592	homeostatic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0048878	chemical homeostasis	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901615	organic hydroxy compound metabolic process	None	Extended
BP	GO:1901617	organic hydroxy compound biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	HCCA
BP	GO:0003333	amino acid transmembrane transport	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0005215	transporter activity	IEP	HCCA
MF	GO:0005342	organic acid transmembrane transporter activity	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
BP	GO:0006811	monoatomic ion transport	IEP	HCCA
BP	GO:0006812	monoatomic cation transport	IEP	HCCA
BP	GO:0006813	potassium ion transport	IEP	HCCA
BP	GO:0006814	sodium ion transport	IEP	HCCA
BP	GO:0006970	response to osmotic stress	IEP	HCCA
BP	GO:0009553	embryo sac development	IEP	HCCA
BP	GO:0009556	microsporogenesis	IEP	HCCA
BP	GO:0009651	response to salt stress	IEP	HCCA
BP	GO:0009736	cytokinin-activated signaling pathway	IEP	HCCA
MF	GO:0009927	histidine phosphotransfer kinase activity	IEP	HCCA
BP	GO:0010029	regulation of seed germination	IEP	HCCA
BP	GO:0010089	xylem development	IEP	HCCA
BP	GO:0010222	stem vascular tissue pattern formation	IEP	HCCA
BP	GO:0010345	suberin biosynthetic process	IEP	HCCA
BP	GO:0010588	cotyledon vascular tissue pattern formation	IEP	HCCA
MF	GO:0015081	sodium ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015171	amino acid transmembrane transporter activity	IEP	HCCA
MF	GO:0015179	L-amino acid transmembrane transporter activity	IEP	HCCA
MF	GO:0015562	efflux transmembrane transporter activity	IEP	HCCA
BP	GO:0015698	inorganic anion transport	IEP	HCCA
MF	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	HCCA
BP	GO:0019725	cellular homeostasis	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
MF	GO:0019900	kinase binding	IEP	HCCA
MF	GO:0019901	protein kinase binding	IEP	HCCA
MF	GO:0022857	transmembrane transporter activity	IEP	HCCA
BP	GO:0030001	metal ion transport	IEP	HCCA
BP	GO:0031537	regulation of anthocyanin metabolic process	IEP	HCCA
BP	GO:0032973	amino acid export across plasma membrane	IEP	HCCA
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	HCCA
BP	GO:0034293	sexual sporulation	IEP	HCCA
MF	GO:0034639	L-amino acid efflux transmembrane transporter activity	IEP	HCCA
BP	GO:0035725	sodium ion transmembrane transport	IEP	HCCA
BP	GO:0043090	amino acid import	IEP	HCCA
MF	GO:0043424	protein histidine kinase binding	IEP	HCCA
BP	GO:0043934	sporulation	IEP	HCCA
MF	GO:0046943	carboxylic acid transmembrane transporter activity	IEP	HCCA
BP	GO:0048236	plant-type sporogenesis	IEP	HCCA
MF	GO:0050062	long-chain-fatty-acyl-CoA reductase activity	IEP	HCCA
MF	GO:0050734	hydroxycinnamoyltransferase activity	IEP	HCCA
BP	GO:0051321	meiotic cell cycle	IEP	HCCA
BP	GO:0055082	cellular chemical homeostasis	IEP	HCCA
BP	GO:0055085	transmembrane transport	IEP	HCCA
BP	GO:0080036	regulation of cytokinin-activated signaling pathway	IEP	HCCA
BP	GO:0080144	cellular amino acid homeostasis	IEP	HCCA
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	HCCA
BP	GO:0098660	inorganic ion transmembrane transport	IEP	HCCA
BP	GO:0098662	inorganic cation transmembrane transport	IEP	HCCA
BP	GO:0140115	export across plasma membrane	IEP	HCCA
BP	GO:0140352	export from cell	IEP	HCCA
BP	GO:1900140	regulation of seedling development	IEP	HCCA
BP	GO:1903825	organic acid transmembrane transport	IEP	HCCA
BP	GO:1905039	carboxylic acid transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004993	GH3	17	579

External Links

No external refs found!

AT1G28130 (GH3.17)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation