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  5. AT1G24560

AT1G24560


Description : unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49055.1); Has 71940 Blast hits to 38124 proteins in 2481 species: Archae - 1358; Bacteria - 12126; Metazoa - 32861; Fungi - 6786; Plants - 4024; Viruses - 195; Other Eukaryotes - 14590 (source: NCBI BLink).


Gene families : OG0003055 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003055_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G24560
Cluster HCCA: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00166p00076690 evm_27.TU.AmTr_v1... Vesicle trafficking.regulation of membrane tethering and... 0.02 OrthoFinder output from all 47 species
Ala_g14018 No alias RAB5 plant-specific effector *(PUF2) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene06109.t1 Aspi01Gene06109 RAB5 plant-specific effector *(PUF2) & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g21634 No alias RAB5 plant-specific effector *(PUF2) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01000568001 No alias Vesicle trafficking.regulation of membrane tethering and... 0.05 OrthoFinder output from all 47 species
Solyc05g013780.3.1 Solyc05g013780 plant-specific RAB5 effector (PUF2) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
BP GO:0006486 protein glycosylation RCA Interproscan
BP GO:0006816 calcium ion transport RCA Interproscan
BP GO:0008150 biological_process ND Interproscan
BP GO:0009630 gravitropism RCA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004084 branched-chain-amino-acid transaminase activity IEP HCCA
MF GO:0005199 structural constituent of cell wall IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
CC GO:0005911 cell-cell junction IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006820 monoatomic anion transport IEP HCCA
BP GO:0006862 nucleotide transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0008284 positive regulation of cell population proliferation IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
CC GO:0009506 plasmodesma IEP HCCA
BP GO:0010155 regulation of proton transport IEP HCCA
BP GO:0015748 organophosphate ester transport IEP HCCA
BP GO:0015802 basic amino acid transport IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0019900 kinase binding IEP HCCA
MF GO:0019901 protein kinase binding IEP HCCA
CC GO:0030054 cell junction IEP HCCA
BP GO:0034762 regulation of transmembrane transport IEP HCCA
BP GO:0034765 regulation of monoatomic ion transmembrane transport IEP HCCA
BP GO:0042127 regulation of cell population proliferation IEP HCCA
BP GO:0043090 amino acid import IEP HCCA
BP GO:0043269 regulation of monoatomic ion transport IEP HCCA
MF GO:0043424 protein histidine kinase binding IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
CC GO:0070161 anchoring junction IEP HCCA
BP GO:1904062 regulation of monoatomic cation transmembrane transport IEP HCCA

No InterPro domains available for this sequence

No external refs found!