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  5. AT1G22020

AT1G22020 (SHM6)


Aliases : SHM6

Description : serine hydroxymethyltransferase 6


Gene families : OG0000518 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000518_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G22020
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
Als_g06323 SHM7 EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Cba_g07101 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
GSVIVT01008954001 SHM7 Amino acid metabolism.biosynthesis.serine... 0.03 OrthoFinder output from all 47 species
Sam_g10420 No alias EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
Tin_g02129 SHM7 EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004372 glycine hydroxymethyltransferase activity ISS Interproscan
BP GO:0006544 glycine metabolic process ISS Interproscan
BP GO:0006563 L-serine metabolic process ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005794 Golgi apparatus IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006497 protein lipidation IEP HCCA
BP GO:0006498 N-terminal protein lipidation IEP HCCA
BP GO:0006499 N-terminal protein myristoylation IEP HCCA
BP GO:0006914 autophagy IEP HCCA
BP GO:0009410 response to xenobiotic stimulus IEP HCCA
BP GO:0009608 response to symbiont IEP HCCA
BP GO:0009610 response to symbiotic fungus IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016706 2-oxoglutarate-dependent dioxygenase activity IEP HCCA
BP GO:0018126 protein hydroxylation IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0018377 protein myristoylation IEP HCCA
BP GO:0018401 peptidyl-proline hydroxylation to 4-hydroxy-L-proline IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019511 peptidyl-proline hydroxylation IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0031365 N-terminal protein amino acid modification IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0042538 hyperosmotic salinity response IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
MF GO:0051087 chaperone binding IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
BP GO:0061919 process utilizing autophagic mechanism IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
InterPro domains Description Start Stop
IPR039429 SHMT-like_dom 142 546
No external refs found!