AT1G20960 (emb1507)

Aliases : emb1507

Description : U5 small nuclear ribonucleoprotein helicase, putative

Gene families : OG0001175 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001175_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G20960

Target	Alias	Description	ECC score	Gene Family Method
Als_g01991	emb1507	RNA helicase *(Brr2) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene09499.t1	emb1507, Aspi01Gene09499	RNA helicase *(Brr2) & original description: none	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000865.27	emb1507	DExH-box ATP-dependent RNA helicase DExH12...	0.02	OrthoFinder output from all 47 species
Ehy_g12876	emb1507	RNA helicase *(Brr2) & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01010769001	emb1507	DExH-box ATP-dependent RNA helicase DExH12...	0.04	OrthoFinder output from all 47 species
Gb_27895	emb1507	RNA helicase (Brr2)	0.03	OrthoFinder output from all 47 species
LOC_Os02g01740.1	emb1507, LOC_Os02g01740	RNA helicase (Brr2)	0.04	OrthoFinder output from all 47 species
Len_g21125	No alias	RNA helicase *(Brr2) & original description: none	0.02	OrthoFinder output from all 47 species
MA_81219g0030	emb1507	DExH-box ATP-dependent RNA helicase DExH12...	0.02	OrthoFinder output from all 47 species
Mp1g06890.1	emb1507	RNA helicase (Brr2)	0.02	OrthoFinder output from all 47 species
Msp_g14398	No alias	RNA helicase *(Brr2) & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g25813	No alias	RNA helicase *(Brr2) & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g09495	No alias	RNA helicase *(Brr2) & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g36113	No alias	RNA helicase *(Brr2) & original description: none	0.02	OrthoFinder output from all 47 species
Smo144158	emb1507	RNA processing.RNA splicing.spliceosome...	0.04	OrthoFinder output from all 47 species
Spa_g39786	No alias	RNA helicase *(Brr2) & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e035676_P001	emb1507, Zm00001e035676	RNA helicase (Brr2)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005730	nucleolus	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009165	nucleotide biosynthetic process	RCA	Interproscan
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	NAS	Interproscan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033043	regulation of organelle organization	None	Extended
BP	GO:0033044	regulation of chromosome organization	RCA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901293	nucleoside phosphate biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000910	cytokinesis	IEP	HCCA
BP	GO:0000911	cytokinesis by cell plate formation	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0006346	DNA methylation-dependent heterochromatin formation	IEP	HCCA
BP	GO:0006714	sesquiterpenoid metabolic process	IEP	HCCA
BP	GO:0006897	endocytosis	IEP	HCCA
BP	GO:0007267	cell-cell signaling	IEP	HCCA
BP	GO:0008284	positive regulation of cell population proliferation	IEP	HCCA
BP	GO:0009606	tropism	IEP	HCCA
BP	GO:0009616	RNAi-mediated antiviral immune response	IEP	HCCA
BP	GO:0009629	response to gravity	IEP	HCCA
BP	GO:0009630	gravitropism	IEP	HCCA
BP	GO:0009639	response to red or far red light	IEP	HCCA
BP	GO:0009687	abscisic acid metabolic process	IEP	HCCA
BP	GO:0009688	abscisic acid biosynthetic process	IEP	HCCA
BP	GO:0009791	post-embryonic development	IEP	HCCA
BP	GO:0009799	specification of symmetry	IEP	HCCA
BP	GO:0009855	determination of bilateral symmetry	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0009911	positive regulation of flower development	IEP	HCCA
BP	GO:0009960	endosperm development	IEP	HCCA
BP	GO:0010050	vegetative phase change	IEP	HCCA
BP	GO:0010073	meristem maintenance	IEP	HCCA
BP	GO:0010267	ta-siRNA processing	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0015074	DNA integration	IEP	HCCA
BP	GO:0016106	sesquiterpenoid biosynthetic process	IEP	HCCA
BP	GO:0016441	post-transcriptional gene silencing	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
BP	GO:0023052	signaling	IEP	HCCA
BP	GO:0030422	siRNA processing	IEP	HCCA
BP	GO:0035194	RNA-mediated post-transcriptional gene silencing	IEP	HCCA
BP	GO:0035196	miRNA processing	IEP	HCCA
BP	GO:0042127	regulation of cell population proliferation	IEP	HCCA
BP	GO:0043288	apocarotenoid metabolic process	IEP	HCCA
BP	GO:0043289	apocarotenoid biosynthetic process	IEP	HCCA
BP	GO:0046165	alcohol biosynthetic process	IEP	HCCA
BP	GO:0048582	positive regulation of post-embryonic development	IEP	HCCA
BP	GO:0051094	positive regulation of developmental process	IEP	HCCA
BP	GO:0051240	positive regulation of multicellular organismal process	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0140718	facultative heterochromatin formation	IEP	HCCA
BP	GO:1902644	tertiary alcohol metabolic process	IEP	HCCA
BP	GO:1902645	tertiary alcohol biosynthetic process	IEP	HCCA
BP	GO:2000243	positive regulation of reproductive process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004179	Sec63-dom	1839	2157
IPR011545	DEAD/DEAH_box_helicase_dom	507	682
IPR001650	Helicase_C	792	882
IPR011545	DEAD/DEAH_box_helicase_dom	1353	1520
IPR004179	Sec63-dom	1006	1308

External Links

No external refs found!

AT1G20960 (emb1507)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation