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AT1G20920


Description : P-loop containing nucleoside triphosphate hydrolases superfamily protein


Gene families : OG0003781 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003781_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G20920
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene01686.t1 Aspi01Gene01686 RNA helicase *(RCF1) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0051.g031460 No alias RNA helicase *(RCF1) & original description: CDS=143-4114 0.04 OrthoFinder output from all 47 species
Ceric.37G065700.1 Ceric.37G065700 RNA helicase *(RCF1) & original description:... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000204.43 No alias RNA processing.RNA splicing.spliceosome... 0.03 OrthoFinder output from all 47 species
Cre16.g676400 No alias RNA processing.RNA splicing.spliceosome... 0.02 OrthoFinder output from all 47 species
Dcu_g06489 No alias RNA helicase *(RCF1) & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01023849001 No alias DEAD-box ATP-dependent RNA helicase 45 OS=Arabidopsis thaliana 0.09 OrthoFinder output from all 47 species
MA_175476g0010 No alias RNA helicase (Prp5) 0.07 OrthoFinder output from all 47 species
Mp1g06750.1 No alias RNA helicase (Prp5) 0.06 OrthoFinder output from all 47 species
Ore_g10272 No alias RNA helicase *(RCF1) & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g06483 No alias RNA helicase *(RCF1) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0020.g008100 No alias RNA helicase *(RCF1) & original description: CDS=2712-3680 0.02 OrthoFinder output from all 47 species
Solyc12g098700.1.1 Solyc12g098700 RNA helicase (Prp5) 0.09 OrthoFinder output from all 47 species
Zm00001e040204_P001 Zm00001e040204 RNA helicase (Prp5) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0001932 regulation of protein phosphorylation IEP HCCA
BP GO:0001933 negative regulation of protein phosphorylation IEP HCCA
MF GO:0004439 phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEP HCCA
CC GO:0005829 cytosol IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006469 negative regulation of protein kinase activity IEP HCCA
BP GO:0006470 protein dephosphorylation IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010563 negative regulation of phosphorus metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0031400 negative regulation of protein modification process IEP HCCA
BP GO:0033673 negative regulation of kinase activity IEP HCCA
MF GO:0034593 phosphatidylinositol bisphosphate phosphatase activity IEP HCCA
MF GO:0034595 phosphatidylinositol phosphate 5-phosphatase activity IEP HCCA
BP GO:0042325 regulation of phosphorylation IEP HCCA
BP GO:0042326 negative regulation of phosphorylation IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0043405 regulation of MAP kinase activity IEP HCCA
BP GO:0043407 negative regulation of MAP kinase activity IEP HCCA
BP GO:0043408 regulation of MAPK cascade IEP HCCA
BP GO:0043409 negative regulation of MAPK cascade IEP HCCA
BP GO:0043549 regulation of kinase activity IEP HCCA
BP GO:0045859 regulation of protein kinase activity IEP HCCA
BP GO:0045936 negative regulation of phosphate metabolic process IEP HCCA
BP GO:0046164 alcohol catabolic process IEP HCCA
BP GO:0046174 polyol catabolic process IEP HCCA
BP GO:0046434 organophosphate catabolic process IEP HCCA
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP HCCA
BP GO:0046855 inositol phosphate dephosphorylation IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051338 regulation of transferase activity IEP HCCA
BP GO:0051348 negative regulation of transferase activity IEP HCCA
MF GO:0052866 phosphatidylinositol phosphate phosphatase activity IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0071545 inositol phosphate catabolic process IEP HCCA
BP GO:0071900 regulation of protein serine/threonine kinase activity IEP HCCA
BP GO:0071901 negative regulation of protein serine/threonine kinase activity IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0106019 phosphatidylinositol-4,5-bisphosphate phosphatase activity IEP HCCA
BP GO:1901616 organic hydroxy compound catabolic process IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
BP GO:1902532 negative regulation of intracellular signal transduction IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 762 871
IPR011545 DEAD/DEAH_box_helicase_dom 554 727
No external refs found!