AT1G20780 (PUB44, SAUL1, ATPUB44)

Aliases : PUB44, SAUL1, ATPUB44

Description : senescence-associated E3 ubiquitin ligase 1

Gene families : OG0001077 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001077_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G20780
Cluster	HCCA: Cluster_132

Target	Alias	Description	ECC score	Gene Family Method
Cba_g05316	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.03G047200.1	PUB44, SAUL1,...	E3 ubiquitin ligase *(SAUL) & original description:...	0.05	OrthoFinder output from all 47 species
Ehy_g06205	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.05	OrthoFinder output from all 47 species
GSVIVT01024723001	PUB44, SAUL1, ATPUB44	Protein degradation.peptide tagging.Ubiquitin...	0.04	OrthoFinder output from all 47 species
LOC_Os03g45420.1	PUB44, SAUL1,...	E3 ubiquitin ligase (PUB)	0.05	OrthoFinder output from all 47 species
LOC_Os06g16410.1	LOC_Os06g16410	E3 ubiquitin ligase (PUB)	0.04	OrthoFinder output from all 47 species
Msp_g07725	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g28889	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005833	No alias	not classified & original description: CDS=1-537	0.03	OrthoFinder output from all 47 species
Solyc04g082570.3.1	PUB44, SAUL1,...	E3 ubiquitin ligase (PUB)	0.05	OrthoFinder output from all 47 species
Solyc05g010650.3.1	Solyc05g010650	E3 ubiquitin ligase (PUB)	0.02	OrthoFinder output from all 47 species
Spa_g05726	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g07747	PUB44, SAUL1, ATPUB44	E3 ubiquiTin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IDA	Interproscan
MF	GO:0005102	signaling receptor binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005737	cytoplasm	IDA	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009894	regulation of catabolic process	None	Extended
BP	GO:0010115	regulation of abscisic acid biosynthetic process	IMP	Interproscan
BP	GO:0010150	leaf senescence	IMP	Interproscan
BP	GO:0010271	regulation of chlorophyll catabolic process	IMP	Interproscan
BP	GO:0010380	regulation of chlorophyll biosynthetic process	IMP	Interproscan
BP	GO:0010565	regulation of cellular ketone metabolic process	None	Extended
CC	GO:0016020	membrane	None	Extended
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019216	regulation of lipid metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019747	regulation of isoprenoid metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
BP	GO:0031329	regulation of cellular catabolic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
MF	GO:0033612	receptor serine/threonine kinase binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043455	regulation of secondary metabolic process	None	Extended
BP	GO:0045827	negative regulation of isoprenoid metabolic process	None	Extended
BP	GO:0045833	negative regulation of lipid metabolic process	None	Extended
BP	GO:0046890	regulation of lipid biosynthetic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051055	negative regulation of lipid biosynthetic process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0062012	regulation of small molecule metabolic process	None	Extended
BP	GO:0062014	negative regulation of small molecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
MF	GO:0070696	transmembrane receptor protein serine/threonine kinase binding	IPI	Interproscan
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090056	regulation of chlorophyll metabolic process	None	Extended
BP	GO:0090359	negative regulation of abscisic acid biosynthetic process	IMP	Interproscan
BP	GO:0090693	plant organ senescence	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901401	regulation of tetrapyrrole metabolic process	None	Extended
BP	GO:1901404	regulation of tetrapyrrole catabolic process	None	Extended
BP	GO:1901463	regulation of tetrapyrrole biosynthetic process	None	Extended
BP	GO:1902930	regulation of alcohol biosynthetic process	None	Extended
BP	GO:1902931	negative regulation of alcohol biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0002229	defense response to oomycetes	IEP	HCCA
BP	GO:0002239	response to oomycetes	IEP	HCCA
BP	GO:0002682	regulation of immune system process	IEP	HCCA
BP	GO:0002831	regulation of response to biotic stimulus	IEP	HCCA
BP	GO:0005996	monosaccharide metabolic process	IEP	HCCA
BP	GO:0006007	glucose catabolic process	IEP	HCCA
BP	GO:0006355	regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006612	protein targeting to membrane	IEP	HCCA
BP	GO:0006820	monoatomic anion transport	IEP	HCCA
BP	GO:0006828	manganese ion transport	IEP	HCCA
BP	GO:0006862	nucleotide transport	IEP	HCCA
BP	GO:0006865	amino acid transport	IEP	HCCA
BP	GO:0006875	cellular metal ion homeostasis	IEP	HCCA
BP	GO:0006882	cellular zinc ion homeostasis	IEP	HCCA
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0006914	autophagy	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006952	defense response	IEP	HCCA
BP	GO:0006970	response to osmotic stress	IEP	HCCA
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	HCCA
BP	GO:0008219	cell death	IEP	HCCA
BP	GO:0009225	nucleotide-sugar metabolic process	IEP	HCCA
BP	GO:0009605	response to external stimulus	IEP	HCCA
BP	GO:0009607	response to biotic stimulus	IEP	HCCA
BP	GO:0009608	response to symbiont	IEP	HCCA
BP	GO:0009610	response to symbiotic fungus	IEP	HCCA
BP	GO:0009617	response to bacterium	IEP	HCCA
BP	GO:0009620	response to fungus	IEP	HCCA
BP	GO:0009624	response to nematode	IEP	HCCA
BP	GO:0009636	response to toxic substance	IEP	HCCA
CC	GO:0009705	plant-type vacuole membrane	IEP	HCCA
BP	GO:0009742	brassinosteroid mediated signaling pathway	IEP	HCCA
BP	GO:0009755	hormone-mediated signaling pathway	IEP	HCCA
BP	GO:0010188	response to microbial phytotoxin	IEP	HCCA
BP	GO:0010193	response to ozone	IEP	HCCA
BP	GO:0010359	regulation of anion channel activity	IEP	HCCA
BP	GO:0010363	regulation of plant-type hypersensitive response	IEP	HCCA
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010941	regulation of cell death	IEP	HCCA
CC	GO:0012505	endomembrane system	IEP	HCCA
MF	GO:0015085	calcium ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015297	antiporter activity	IEP	HCCA
MF	GO:0015368	calcium:monoatomic cation antiporter activity	IEP	HCCA
MF	GO:0015369	calcium:proton antiporter activity	IEP	HCCA
BP	GO:0015691	cadmium ion transport	IEP	HCCA
BP	GO:0015748	organophosphate ester transport	IEP	HCCA
BP	GO:0015802	basic amino acid transport	IEP	HCCA
BP	GO:0015849	organic acid transport	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	HCCA
MF	GO:0016854	racemase and epimerase activity	IEP	HCCA
MF	GO:0016857	racemase and epimerase activity, acting on carbohydrates and derivatives	IEP	HCCA
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0019320	hexose catabolic process	IEP	HCCA
BP	GO:0019321	pentose metabolic process	IEP	HCCA
BP	GO:0019322	pentose biosynthetic process	IEP	HCCA
BP	GO:0019566	arabinose metabolic process	IEP	HCCA
BP	GO:0019567	arabinose biosynthetic process	IEP	HCCA
BP	GO:0022898	regulation of transmembrane transporter activity	IEP	HCCA
BP	GO:0030244	cellulose biosynthetic process	IEP	HCCA
BP	GO:0031347	regulation of defense response	IEP	HCCA
BP	GO:0032101	regulation of response to external stimulus	IEP	HCCA
BP	GO:0032409	regulation of transporter activity	IEP	HCCA
BP	GO:0032412	regulation of monoatomic ion transmembrane transporter activity	IEP	HCCA
BP	GO:0032879	regulation of localization	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0033037	polysaccharide localization	IEP	HCCA
BP	GO:0034765	regulation of monoatomic ion transmembrane transport	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	HCCA
BP	GO:0042742	defense response to bacterium	IEP	HCCA
BP	GO:0043067	regulation of programmed cell death	IEP	HCCA
BP	GO:0043069	negative regulation of programmed cell death	IEP	HCCA
BP	GO:0043090	amino acid import	IEP	HCCA
BP	GO:0043207	response to external biotic stimulus	IEP	HCCA
BP	GO:0043269	regulation of monoatomic ion transport	IEP	HCCA
BP	GO:0043401	steroid hormone mediated signaling pathway	IEP	HCCA
BP	GO:0043903	regulation of biological process involved in symbiotic interaction	IEP	HCCA
BP	GO:0044070	regulation of monoatomic anion transport	IEP	HCCA
BP	GO:0044419	biological process involved in interspecies interaction between organisms	IEP	HCCA
BP	GO:0045088	regulation of innate immune response	IEP	HCCA
BP	GO:0046365	monosaccharide catabolic process	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0046916	cellular transition metal ion homeostasis	IEP	HCCA
MF	GO:0046982	protein heterodimerization activity	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0048583	regulation of response to stimulus	IEP	HCCA
MF	GO:0050373	UDP-arabinose 4-epimerase activity	IEP	HCCA
BP	GO:0050776	regulation of immune response	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051049	regulation of transport	IEP	HCCA
MF	GO:0051139	metal cation:proton antiporter activity	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051252	regulation of RNA metabolic process	IEP	HCCA
BP	GO:0051274	beta-glucan biosynthetic process	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
BP	GO:0051707	response to other organism	IEP	HCCA
BP	GO:0052542	defense response by callose deposition	IEP	HCCA
BP	GO:0052545	callose localization	IEP	HCCA
BP	GO:0055065	metal ion homeostasis	IEP	HCCA
BP	GO:0055069	zinc ion homeostasis	IEP	HCCA
BP	GO:0055076	transition metal ion homeostasis	IEP	HCCA
BP	GO:0060548	negative regulation of cell death	IEP	HCCA
BP	GO:0061919	process utilizing autophagic mechanism	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
BP	GO:0080134	regulation of response to stress	IEP	HCCA
BP	GO:0080135	regulation of cellular response to stress	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA
MF	GO:0140828	metal cation:monoatomic cation antiporter activity	IEP	HCCA
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:1903959	regulation of monoatomic anion transmembrane transport	IEP	HCCA
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000225	Armadillo	672	699
IPR003613	Ubox_domain	25	98

External Links

No external refs found!

AT1G20780 (PUB44, SAUL1, ATPUB44)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation