AT1G20580

Description : Small nuclear ribonucleoprotein family protein

Gene families : OG0003441 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003441_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G20580

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00047670	evm_27.TU.AmTr_v1...	RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm...	0.03	OrthoFinder output from all 47 species
Als_g18634	No alias	component *(Sm-D3) of U1/U2/U4/U5-associated Sm...	0.03	OrthoFinder output from all 47 species
Aspi01Gene13749.t1	Aspi01Gene13749	component *(Sm-D3) of U1/U2/U4/U5-associated Sm...	0.02	OrthoFinder output from all 47 species
Azfi_s0373.g067189	No alias	component *(Sm-D3) of U1/U2/U4/U5-associated Sm...	0.03	OrthoFinder output from all 47 species
Cre10.g455300	No alias	RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm...	0.03	OrthoFinder output from all 47 species
Dcu_g05211	No alias	component *(Sm-D3) of U1/U2/U4/U5-associated Sm...	0.05	OrthoFinder output from all 47 species
GSVIVT01013364001	No alias	RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm...	0.03	OrthoFinder output from all 47 species
GSVIVT01023894001	No alias	RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm...	0.06	OrthoFinder output from all 47 species
LOC_Os02g01250.1	LOC_Os02g01250	component Sm-D3 of U1/U2/U4/U5-associated Sm accessory...	0.08	OrthoFinder output from all 47 species
LOC_Os03g13760.1	LOC_Os03g13760	component Sm-D3 of U1/U2/U4/U5-associated Sm accessory...	0.03	OrthoFinder output from all 47 species
Len_g36954	No alias	component *(Sm-D3) of U1/U2/U4/U5-associated Sm...	0.04	OrthoFinder output from all 47 species
Mp1g11210.1	No alias	component Sm-D3 of U1/U2/U4/U5-associated Sm accessory...	0.03	OrthoFinder output from all 47 species
Msp_g07432	No alias	component *(Sm-D3) of U1/U2/U4/U5-associated Sm...	0.04	OrthoFinder output from all 47 species
Nbi_g20365	No alias	component *(Sm-D3) of U1/U2/U4/U5-associated Sm...	0.04	OrthoFinder output from all 47 species
Ore_g07249	No alias	component *(Sm-D3) of U1/U2/U4/U5-associated Sm...	0.03	OrthoFinder output from all 47 species
Solyc02g062240.3.1	Solyc02g062240	component Sm-D3 of U1/U2/U4/U5-associated Sm accessory...	0.07	OrthoFinder output from all 47 species
Tin_g01402	No alias	component *(Sm-D3) of U1/U2/U4/U5-associated Sm...	0.03	OrthoFinder output from all 47 species
Zm00001e013395_P002	Zm00001e013395	component Sm-D3 of U1/U2/U4/U5-associated Sm accessory...	0.08	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	RCA	Interproscan
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005730	nucleolus	IDA	Interproscan
CC	GO:0005732	sno(s)RNA-containing ribonucleoprotein complex	ISS	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0032259	methylation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009664	plant-type cell wall organization	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
CC	GO:0022626	cytosolic ribosome	IEP	HCCA
CC	GO:0022627	cytosolic small ribosomal subunit	IEP	HCCA
CC	GO:0030684	preribosome	IEP	HCCA
CC	GO:0030686	90S preribosome	IEP	HCCA
CC	GO:0032040	small-subunit processome	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042274	ribosomal small subunit biogenesis	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA
BP	GO:1901576	organic substance biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001163	LSM_dom_euk/arc	11	74

External Links

No external refs found!

AT1G20580

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation