1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT1G19120

AT1G19120


Description : Small nuclear ribonucleoprotein family protein


Gene families : OG0003066 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003066_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G19120
Cluster HCCA: Cluster_103

Target Alias Description ECC score Gene Family Method Actions
Adi_g087172 No alias component *(LSm1) of U6-associated LSm accessory... 0.02 OrthoFinder output from all 47 species
Cre12.g538750 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.03 OrthoFinder output from all 47 species
Sam_g46618 No alias component *(LSm1) of U6-associated LSm accessory... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0000932 P-body IDA Interproscan
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005634 nucleus ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex ISS Interproscan
BP GO:0010228 vegetative to reproductive phase transition of meristem RCA Interproscan
BP GO:0016070 RNA metabolic process IGI Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
CC GO:0005677 chromatin silencing complex IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0008430 selenium binding IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 14 80
No external refs found!