Gb_37914


Description : Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana (sp|q9zt94|polr2_arath : 351.0)


Gene families : OG_01_0000054 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000054_tree ,
OG_02_0000134 (LandPlants) Phylogenetic Tree(s): OG_02_0000134_tree ,
OG_03_0000108 (SeedPlants) Phylogenetic Tree(s): OG_03_0000108_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_37914
Cluster HCCA: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
Gb_00282 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.03 Archaeplastida
Gb_02021 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.08 Archaeplastida
Gb_04615 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.1 Archaeplastida
Gb_04745 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.07 Archaeplastida
Gb_05895 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.06 Archaeplastida
Gb_06715 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.08 Archaeplastida
Gb_07643 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.05 Archaeplastida
Gb_08000 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.08 Archaeplastida
Gb_12163 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 Archaeplastida
Gb_13694 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 Archaeplastida
Gb_14369 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.09 Archaeplastida
Gb_16624 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 Archaeplastida
Gb_18990 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 Archaeplastida
Gb_23035 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.09 Archaeplastida
Gb_25800 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.08 Archaeplastida
Gb_28245 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 Archaeplastida
Gb_29932 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 Archaeplastida
Gb_31472 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 Archaeplastida
Gb_31929 No alias Uncharacterized mitochondrial protein AtMg00820... 0.05 Archaeplastida
Gb_32087 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.04 Archaeplastida
Gb_37459 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.05 Archaeplastida
Gb_37683 No alias no hits & (original description: none) 0.09 Archaeplastida
Gb_38369 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 Archaeplastida
Gb_41823 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.03 Archaeplastida
Gb_00311 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 LandPlants
Gb_01729 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 LandPlants
Gb_06034 No alias no hits & (original description: none) 0.08 LandPlants
Gb_06223 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 LandPlants
Gb_06978 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.08 LandPlants
Gb_08666 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 LandPlants
Gb_09514 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 LandPlants
Gb_10322 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 LandPlants
Gb_10876 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.11 LandPlants
Gb_13701 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 LandPlants
Gb_15820 No alias no hits & (original description: none) 0.05 LandPlants
Gb_21118 No alias no hits & (original description: none) 0.06 LandPlants
Gb_21518 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 LandPlants
Gb_21972 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 LandPlants
Gb_22414 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.16 LandPlants
Gb_25323 No alias no hits & (original description: none) 0.04 LandPlants
Gb_26269 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 LandPlants
Gb_26759 No alias no hits & (original description: none) 0.05 LandPlants
Gb_27233 No alias no hits & (original description: none) 0.03 LandPlants
Gb_27666 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 LandPlants
Gb_28622 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.09 LandPlants
Gb_29546 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 LandPlants
Gb_29919 No alias no hits & (original description: none) 0.17 LandPlants
Gb_33182 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.08 LandPlants
Gb_33497 No alias no hits & (original description: none) 0.04 LandPlants
Gb_34085 No alias no hits & (original description: none) 0.11 LandPlants
Gb_35302 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 LandPlants
Gb_39185 No alias no hits & (original description: none) 0.05 LandPlants
Gb_40384 No alias no hits & (original description: none) 0.05 LandPlants
Gb_00311 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 SeedPlants
Gb_01729 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 SeedPlants
Gb_06034 No alias no hits & (original description: none) 0.08 SeedPlants
Gb_06223 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 SeedPlants
Gb_06978 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.08 SeedPlants
Gb_08666 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 SeedPlants
Gb_09514 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 SeedPlants
Gb_10322 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 SeedPlants
Gb_10876 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.11 SeedPlants
Gb_13701 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 SeedPlants
Gb_15820 No alias no hits & (original description: none) 0.05 SeedPlants
Gb_21118 No alias no hits & (original description: none) 0.06 SeedPlants
Gb_21518 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 SeedPlants
Gb_21972 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 SeedPlants
Gb_22414 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.16 SeedPlants
Gb_26269 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 SeedPlants
Gb_26759 No alias no hits & (original description: none) 0.05 SeedPlants
Gb_27666 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 SeedPlants
Gb_28622 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.09 SeedPlants
Gb_29546 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 SeedPlants
Gb_29919 No alias no hits & (original description: none) 0.17 SeedPlants
Gb_33497 No alias no hits & (original description: none) 0.04 SeedPlants
Gb_34085 No alias no hits & (original description: none) 0.11 SeedPlants
Gb_35302 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 SeedPlants
Gb_39185 No alias no hits & (original description: none) 0.05 SeedPlants
Gb_40384 No alias no hits & (original description: none) 0.05 SeedPlants

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR025724 GAG-pre-integrase_dom 479 538
IPR001584 Integrase_cat-core 552 668
IPR013103 RVT_2 909 1150
No external refs found!