Aliases : AtRABA6b, RABA6b
Description : RAB GTPase homolog A6B
Gene families : OG0000247 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000247_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AT1G18200 | |
Cluster | HCCA: Cluster_63 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00055p00167390 | ATRABA5C, ARA4,... | Vesicle trafficking.regulation of membrane tethering and... | 0.03 | OrthoFinder output from all 47 species | |
Als_g37483 | AtRABA1f, RABA1f | A-class RAB GTPase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Azfi_s0158.g053866 | ATRABA2A,... | A-class RAB GTPase & original description: CDS=282-950 | 0.05 | OrthoFinder output from all 47 species | |
Ceric.16G022800.1 | AtRABA1f,... | A-class RAB GTPase & original description:... | 0.03 | OrthoFinder output from all 47 species | |
Dde_g03286 | AtRABA1f, RABA1f | A-class RAB GTPase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ehy_g05302 | AtRABA1f, RABA1f | A-class RAB GTPase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os03g62600.1 | ATRABA2A,... | A-class RAB GTPase | 0.03 | OrthoFinder output from all 47 species | |
Pir_g02178 | AtRABA5a, RABA5a | A-class RAB GTPase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Pnu_g05911 | ATRABA2A,... | A-class RAB GTPase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ppi_g06237 | AtRABA1f, RABA1f | A-class RAB GTPase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ppi_g09438 | AtRABA1f, RABA1f | A-class RAB GTPase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0044.g013006 | AtRABA1f, RABA1f | A-class RAB GTPase & original description: CDS=103-753 | 0.03 | OrthoFinder output from all 47 species | |
Sam_g40897 | No alias | A-class RAB GTPase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Solyc03g118820.4.1 | RABA6a,... | A-class RAB GTPase | 0.03 | OrthoFinder output from all 47 species | |
Solyc09g056340.3.1 | AtRABA5b,... | A-class RAB GTPase | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e020213_P001 | AtRABA1f,... | A-class RAB GTPase | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005525 | GTP binding | ISS | Interproscan |
CC | GO:0005634 | nucleus | ISM | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000289 | nuclear-transcribed mRNA poly(A) tail shortening | IEP | HCCA |
MF | GO:0004527 | exonuclease activity | IEP | HCCA |
MF | GO:0004540 | ribonuclease activity | IEP | HCCA |
BP | GO:0006569 | tryptophan catabolic process | IEP | HCCA |
BP | GO:0006706 | steroid catabolic process | IEP | HCCA |
BP | GO:0008300 | isoprenoid catabolic process | IEP | HCCA |
MF | GO:0008408 | 3'-5' exonuclease activity | IEP | HCCA |
BP | GO:0009056 | catabolic process | IEP | HCCA |
BP | GO:0009074 | aromatic amino acid family catabolic process | IEP | HCCA |
BP | GO:0009685 | gibberellin metabolic process | IEP | HCCA |
BP | GO:0010286 | heat acclimation | IEP | HCCA |
BP | GO:0016042 | lipid catabolic process | IEP | HCCA |
BP | GO:0016054 | organic acid catabolic process | IEP | HCCA |
BP | GO:0016101 | diterpenoid metabolic process | IEP | HCCA |
BP | GO:0016103 | diterpenoid catabolic process | IEP | HCCA |
BP | GO:0016115 | terpenoid catabolic process | IEP | HCCA |
BP | GO:0016127 | sterol catabolic process | IEP | HCCA |
MF | GO:0016706 | 2-oxoglutarate-dependent dioxygenase activity | IEP | HCCA |
BP | GO:0019439 | aromatic compound catabolic process | IEP | HCCA |
BP | GO:0034434 | obsolete sterol esterification | IEP | HCCA |
BP | GO:0042436 | indole-containing compound catabolic process | IEP | HCCA |
BP | GO:0044248 | cellular catabolic process | IEP | HCCA |
BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | HCCA |
BP | GO:0044282 | small molecule catabolic process | IEP | HCCA |
BP | GO:0045487 | gibberellin catabolic process | IEP | HCCA |
MF | GO:0045543 | gibberellin 2-beta-dioxygenase activity | IEP | HCCA |
BP | GO:0046700 | heterocycle catabolic process | IEP | HCCA |
MF | GO:0052634 | C-19 gibberellin 2-beta-dioxygenase activity | IEP | HCCA |
BP | GO:1901361 | organic cyclic compound catabolic process | IEP | HCCA |
BP | GO:1901575 | organic substance catabolic process | IEP | HCCA |
BP | GO:1901616 | organic hydroxy compound catabolic process | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001806 | Small_GTPase | 15 | 174 |
No external refs found! |