AT1G17730 (CHMP1B, VPS46.1)

Aliases : CHMP1B, VPS46.1

Description : vacuolar protein sorting 46.1

Gene families : OG0001221 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001221_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G17730

Target	Alias	Description	ECC score	Gene Family Method
Adi_g015565	CHMP1A, VPS46.2	associated protein of ESCRT-III complex *(VPS46/CHMP1) &...	0.02	OrthoFinder output from all 47 species
Adi_g087281	CHMP1A, VPS46.2	associated protein of ESCRT-III complex *(VPS46/CHMP1) &...	0.02	OrthoFinder output from all 47 species
Ala_g34247	CHMP1A, VPS46.2	associated protein of ESCRT-III complex *(VPS46/CHMP1) &...	0.03	OrthoFinder output from all 47 species
Msp_g08498	CHMP1A, VPS46.2	associated protein of ESCRT-III complex *(VPS46/CHMP1) &...	0.02	OrthoFinder output from all 47 species
Spa_g15038	CHMP1A, VPS46.2	associated protein of ESCRT-III complex *(VPS46/CHMP1) &...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000578	embryonic axis specification	IGI	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0007389	pattern specification process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009798	axis specification	None	Extended
BP	GO:0009880	embryonic pattern specification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016192	vesicle-mediated transport	ISS	Interproscan
BP	GO:0016197	endosomal transport	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032509	endosome transport via multivesicular body sorting pathway	IGI	Interproscan
BP	GO:0040007	growth	IGI	Interproscan
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0071985	multivesicular body sorting pathway	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
BP	GO:0000724	double-strand break repair via homologous recombination	IEP	HCCA
BP	GO:0000725	recombinational repair	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005789	endoplasmic reticulum membrane	IEP	HCCA
CC	GO:0005849	mRNA cleavage factor complex	IEP	HCCA
BP	GO:0006302	double-strand break repair	IEP	HCCA
BP	GO:0006312	mitotic recombination	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0007029	endoplasmic reticulum organization	IEP	HCCA
BP	GO:0008219	cell death	IEP	HCCA
BP	GO:0009314	response to radiation	IEP	HCCA
BP	GO:0009560	embryo sac egg cell differentiation	IEP	HCCA
BP	GO:0009756	carbohydrate mediated signaling	IEP	HCCA
BP	GO:0009845	seed germination	IEP	HCCA
BP	GO:0009891	positive regulation of biosynthetic process	IEP	HCCA
BP	GO:0009893	positive regulation of metabolic process	IEP	HCCA
BP	GO:0009908	flower development	IEP	HCCA
BP	GO:0009933	meristem structural organization	IEP	HCCA
BP	GO:0010162	seed dormancy process	IEP	HCCA
BP	GO:0010182	sugar mediated signaling pathway	IEP	HCCA
BP	GO:0010212	response to ionizing radiation	IEP	HCCA
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0019915	lipid storage	IEP	HCCA
BP	GO:0022611	dormancy process	IEP	HCCA
BP	GO:0030422	siRNA processing	IEP	HCCA
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0035196	miRNA processing	IEP	HCCA
BP	GO:0043687	post-translational protein modification	IEP	HCCA
BP	GO:0045893	positive regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0048367	shoot system development	IEP	HCCA
BP	GO:0048507	meristem development	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0048532	anatomical structure arrangement	IEP	HCCA
BP	GO:0048731	system development	IEP	HCCA
BP	GO:0050826	response to freezing	IEP	HCCA
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051235	maintenance of location	IEP	HCCA
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	HCCA
BP	GO:0070918	regulatory ncRNA processing	IEP	HCCA
CC	GO:0071458	obsolete integral component of cytoplasmic side of endoplasmic reticulum membrane	IEP	HCCA
CC	GO:0071782	endoplasmic reticulum tubular network	IEP	HCCA
BP	GO:0071786	endoplasmic reticulum tubular network organization	IEP	HCCA
BP	GO:0090567	reproductive shoot system development	IEP	HCCA
CC	GO:0098827	endoplasmic reticulum subcompartment	IEP	HCCA
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	HCCA
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005024	Snf7_fam	12	172

External Links

No external refs found!

AT1G17730 (CHMP1B, VPS46.1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation