AT1G15930

Description : Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

Gene families : OG0001020 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001020_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G15930

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00095p00079060	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.11	OrthoFinder output from all 47 species
Adi_g129311	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Aev_g00488	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ala_g12283	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Ala_g16289	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Ala_g38702	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.11	OrthoFinder output from all 47 species
Als_g64124	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aob_g04614	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aob_g04744	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aop_g15941	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.12	OrthoFinder output from all 47 species
Aop_g30423	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Aop_g67327	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.11	OrthoFinder output from all 47 species
Aspi01Gene12124.t1	Aspi01Gene12124	component *(eS12) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Aspi01Gene44625.t1	Aspi01Gene44625	component *(eS12) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0161.g054093	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Cba_g68172	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Cba_g71372	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ceric.37G058700.1	Ceric.37G058700	component *(eS12) of small ribosomal-subunit (SSU)...	0.17	OrthoFinder output from all 47 species
Ceric.37G058800.1	Ceric.37G058800	component *(eS12) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Ceric.37G058900.1	Ceric.37G058900	component *(eS12) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020903.34	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.15	OrthoFinder output from all 47 species
Cre04.g214503	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.17	OrthoFinder output from all 47 species
Dac_g03015	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.11	OrthoFinder output from all 47 species
Dac_g03474	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Dac_g25477	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Dcu_g23793	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Dcu_g38565	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Ehy_g03052	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
GSVIVT01023591001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.09	OrthoFinder output from all 47 species
GSVIVT01034219001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.17	OrthoFinder output from all 47 species
Gb_19269	No alias	component RPS12 of SSU proteome	0.15	OrthoFinder output from all 47 species
Gb_38833	No alias	component RPS12 of SSU proteome	0.1	OrthoFinder output from all 47 species
LOC_Os07g05580.1	LOC_Os07g05580	component RPS12 of SSU proteome	0.14	OrthoFinder output from all 47 species
LOC_Os07g12650.1	LOC_Os07g12650	component RPS12 of SSU proteome	0.09	OrthoFinder output from all 47 species
Len_g03490	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Len_g05775	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Len_g49897	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Len_g54633	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Lfl_g20839	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
MA_16920g0010	No alias	component RPS12 of SSU proteome	0.08	OrthoFinder output from all 47 species
Mp7g11470.1	No alias	component RPS12 of SSU proteome	0.22	OrthoFinder output from all 47 species
Msp_g03347	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Nbi_g05093	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Nbi_g32162	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Ore_g19146	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Pir_g06661	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Pir_g41112	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Pp3c17_3630V3.1	Pp3c17_3630	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	0.07	OrthoFinder output from all 47 species
Ppi_g28222	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ppi_g31355	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0061.g015439	No alias	EC_2.7 transferase transferring phosphorus-containing...	0.11	OrthoFinder output from all 47 species
Sam_g04208	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Sam_g06992	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Sam_g09099	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Sam_g18573	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Smo441919	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.09	OrthoFinder output from all 47 species
Solyc01g103800.3.1	Solyc01g103800	component RPS12 of SSU proteome	0.29	OrthoFinder output from all 47 species
Solyc12g042650.2.1	Solyc12g042650	component RPS12 of SSU proteome	0.25	OrthoFinder output from all 47 species
Spa_g05809	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Spa_g17185	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.21	OrthoFinder output from all 47 species
Spa_g22036	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.13	OrthoFinder output from all 47 species
Spa_g42585	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Spa_g43206	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Tin_g00435	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Tin_g09574	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Zm00001e009380_P001	Zm00001e009380	component RPS12 of SSU proteome	0.18	OrthoFinder output from all 47 species
Zm00001e027021_P002	Zm00001e027021	component RPS12 of SSU proteome	0.05	OrthoFinder output from all 47 species
Zm00001e033149_P001	Zm00001e033149	component RPS12 of SSU proteome	0.16	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005840	ribosome	None	Extended
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006970	response to osmotic stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009651	response to salt stress	IEP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010038	response to metal ion	None	Extended
CC	GO:0015935	small ribosomal subunit	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0022626	cytosolic ribosome	IDA	Interproscan
CC	GO:0022627	cytosolic small ribosomal subunit	IDA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0046686	response to cadmium ion	IEP	Interproscan
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	IEP	HCCA
MF	GO:0005507	copper ion binding	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0009719	response to endogenous stimulus	IEP	HCCA
BP	GO:0009725	response to hormone	IEP	HCCA
BP	GO:0009735	response to cytokinin	IEP	HCCA
BP	GO:0010014	meristem initiation	IEP	HCCA
BP	GO:0010043	response to zinc ion	IEP	HCCA
BP	GO:0010252	auxin homeostasis	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0022603	regulation of anatomical structure morphogenesis	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0048878	chemical homeostasis	IEP	HCCA
BP	GO:0060688	regulation of morphogenesis of a branching structure	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0090506	axillary shoot meristem initiation	IEP	HCCA
BP	GO:1905428	regulation of plant organ formation	IEP	HCCA
BP	GO:2000032	regulation of secondary shoot formation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004038	Ribosomal_L7Ae/L30e/S12e/Gad45	30	123

External Links

No external refs found!

AT1G15930

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation