AT1G15480

Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG0000613 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000613_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G15480

Target	Alias	Description	ECC score	Gene Family Method
AT3G15590	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.06	OrthoFinder output from all 47 species
Adi_g030656	No alias	RNA editing factor *(POCO) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g057168	No alias	RNA editing factor *(POCO) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g32967	PPR596	RNA editing factor *(POCO) & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g75398	PPR596	RNA editing factor *(POCO) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.17G065300.1	Ceric.17G065300	RNA editing factor *(POCO) & original description:...	0.03	OrthoFinder output from all 47 species
GSVIVT01033642001	No alias	Pentatricopeptide repeat-containing protein At1g80270,...	0.02	OrthoFinder output from all 47 species
Gb_03507	No alias	Pentatricopeptide repeat-containing protein At4g02820,...	0.03	OrthoFinder output from all 47 species
LOC_Os02g55310.1	LOC_Os02g55310	Pentatricopeptide repeat-containing protein At5g27460...	0.08	OrthoFinder output from all 47 species
LOC_Os10g35730.1	LOC_Os10g35730	Pentatricopeptide repeat-containing protein At4g02820,...	0.06	OrthoFinder output from all 47 species
LOC_Os12g34340.1	LOC_Os12g34340	Pentatricopeptide repeat-containing protein At4g02820,...	0.04	OrthoFinder output from all 47 species
Len_g02376	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Len_g37557	No alias	RNA editing factor *(POCO) & original description: none	0.05	OrthoFinder output from all 47 species
MA_492314g0010	No alias	RNA editing factor (POCO)	0.03	OrthoFinder output from all 47 species
Msp_g25474	No alias	RNA editing factor *(POCO) & original description: none	0.04	OrthoFinder output from all 47 species
Msp_g31351	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Nbi_g06280	No alias	RNA editing factor *(POCO) & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g09807	No alias	RNA editing factor *(POCO) & original description: none	0.04	OrthoFinder output from all 47 species
Smo412643	No alias	Pentatricopeptide repeat-containing protein At1g07590,...	0.04	OrthoFinder output from all 47 species
Smo413483	No alias	Pentatricopeptide repeat-containing protein At1g80270,...	0.04	OrthoFinder output from all 47 species
Smo416459	No alias	Pentatricopeptide repeat-containing protein At1g80270,...	0.03	OrthoFinder output from all 47 species
Smo421992	No alias	Pentatricopeptide repeat-containing protein At3g15590,...	0.04	OrthoFinder output from all 47 species
Smo444770	No alias	Pentatricopeptide repeat-containing protein At3g15590,...	0.03	OrthoFinder output from all 47 species
Solyc01g079320.4.1	Solyc01g079320	Pentatricopeptide repeat-containing protein At1g02370,...	0.05	OrthoFinder output from all 47 species
Solyc01g089870.3.1	Solyc01g089870	Pentatricopeptide repeat-containing protein At1g02150...	0.02	OrthoFinder output from all 47 species
Tin_g08732	No alias	RNA ediTing factor *(POCO) & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g37476	No alias	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Zm00001e012594_P001	Zm00001e012594	Pentatricopeptide repeat-containing protein At4g21705,...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006302	double-strand break repair	RCA	Interproscan
BP	GO:0006310	DNA recombination	None	Extended
BP	GO:0006312	mitotic recombination	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007059	chromosome segregation	None	Extended
BP	GO:0007062	sister chromatid cohesion	RCA	Interproscan
BP	GO:0007129	homologous chromosome pairing at meiosis	RCA	Interproscan
BP	GO:0007131	reciprocal meiotic recombination	RCA	Interproscan
BP	GO:0008150	biological_process	ND	Interproscan
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009560	embryo sac egg cell differentiation	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0035825	homologous recombination	None	Extended
BP	GO:0042138	meiotic DNA double-strand break formation	RCA	Interproscan
BP	GO:0042991	obsolete transcription factor import into nucleus	RCA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0045132	meiotic chromosome segregation	RCA	Interproscan
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0061982	meiosis I cell cycle process	None	Extended
BP	GO:0070192	chromosome organization involved in meiotic cell cycle	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0098813	nuclear chromosome segregation	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140527	reciprocal homologous recombination	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903046	meiotic cell cycle process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000257	nitrilase activity	IEP	HCCA
CC	GO:0005635	nuclear envelope	IEP	HCCA
CC	GO:0005819	spindle	IEP	HCCA
BP	GO:0006066	alcohol metabolic process	IEP	HCCA
BP	GO:0006714	sesquiterpenoid metabolic process	IEP	HCCA
BP	GO:0006997	nucleus organization	IEP	HCCA
CC	GO:0009524	phragmoplast	IEP	HCCA
BP	GO:0009687	abscisic acid metabolic process	IEP	HCCA
BP	GO:0009688	abscisic acid biosynthetic process	IEP	HCCA
BP	GO:0009744	response to sucrose	IEP	HCCA
BP	GO:0009746	response to hexose	IEP	HCCA
BP	GO:0009749	response to glucose	IEP	HCCA
BP	GO:0009750	response to fructose	IEP	HCCA
BP	GO:0016106	sesquiterpenoid biosynthetic process	IEP	HCCA
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	HCCA
MF	GO:0016815	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in nitriles	IEP	HCCA
BP	GO:0034284	response to monosaccharide	IEP	HCCA
BP	GO:0034285	response to disaccharide	IEP	HCCA
BP	GO:0034504	protein localization to nucleus	IEP	HCCA
BP	GO:0043288	apocarotenoid metabolic process	IEP	HCCA
BP	GO:0043289	apocarotenoid biosynthetic process	IEP	HCCA
BP	GO:0046165	alcohol biosynthetic process	IEP	HCCA
BP	GO:0090435	protein localization to nuclear envelope	IEP	HCCA
BP	GO:0120254	olefinic compound metabolic process	IEP	HCCA
BP	GO:0120255	olefinic compound biosynthetic process	IEP	HCCA
BP	GO:1902644	tertiary alcohol metabolic process	IEP	HCCA
BP	GO:1902645	tertiary alcohol biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	249	307
IPR002885	Pentatricopeptide_repeat	494	551
IPR002885	Pentatricopeptide_repeat	470	489
IPR002885	Pentatricopeptide_repeat	341	360
IPR002885	Pentatricopeptide_repeat	435	464

External Links

No external refs found!

AT1G15480

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation