AT1G14260

Description : RING/FYVE/PHD zinc finger superfamily protein

Gene families : OG0000370 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000370_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G14260

Target	Alias	Description	ECC score	Gene Family Method
Ala_g04464	No alias	E3 ubiquitin ligase & original description: none	0.05	OrthoFinder output from all 47 species
Ala_g18515	No alias	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Als_g40952	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Ehy_g22283	No alias	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01008001001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.04	OrthoFinder output from all 47 species
LOC_Os01g49280.1	LOC_Os01g49280	RING-v-class E3 ligase	0.02	OrthoFinder output from all 47 species
Len_g02124	No alias	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g45666	No alias	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g24552	No alias	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e009834_P004	Zm00001e009834	RING-v-class E3 ligase	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IDA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005886	plasma membrane	ISM	Interproscan
MF	GO:0008270	zinc ion binding	ISS	Interproscan
CC	GO:0016020	membrane	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005504	fatty acid binding	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
CC	GO:0009532	plastid stroma	IEP	HCCA
CC	GO:0009570	chloroplast stroma	IEP	HCCA
MF	GO:0031406	carboxylic acid binding	IEP	HCCA
MF	GO:0033293	monocarboxylic acid binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR022143	DUF3675	109	226
IPR011016	Znf_RING-CH	57	102

External Links

No external refs found!