AT1G13260 (EDF4, RAV1)


Aliases : EDF4, RAV1

Description : related to ABI3/VP1 1


Gene families : OG0000941 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000941_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G13260

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00047p00199500 EDF4, RAV1,... No description available 0.04 OrthoFinder output from all 47 species
AT1G68840 EDF2, AtRAV2,... related to ABI3/VP1 2 0.06 OrthoFinder output from all 47 species
AT2G36080 No alias AP2/B3-like transcriptional factor family protein 0.04 OrthoFinder output from all 47 species
Aev_g44854 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01011947001 EDF2, AtRAV2,... RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
Gb_18035 EDF4, RAV1 transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.04 OrthoFinder output from all 47 species
LOC_Os01g04750.1 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 OrthoFinder output from all 47 species
LOC_Os01g04800.1 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 OrthoFinder output from all 47 species
LOC_Os12g06080.1 LOC_Os12g06080 transcription factor (RAV/NGATHA) 0.03 OrthoFinder output from all 47 species
MA_116574g0010 EDF3 transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 OrthoFinder output from all 47 species
MA_18923g0010 EDF4, RAV1 transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.07 OrthoFinder output from all 47 species
MA_865117g0010 EDF4, RAV1 transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.04 OrthoFinder output from all 47 species
Nbi_g33705 EDF2, AtRAV2,... AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Ore_g38101 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e023240_P001 NGA3, Zm00001e023240 transcription factor (RAV/NGATHA) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IDA Interproscan
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006355 regulation of DNA-templated transcription ISS Interproscan
BP GO:0006612 protein targeting to membrane RCA Interproscan
BP GO:0009741 response to brassinosteroid IEP Interproscan
BP GO:0009910 negative regulation of flower development IMP Interproscan
BP GO:0009963 positive regulation of flavonoid biosynthetic process RCA Interproscan
BP GO:0010363 regulation of plant-type hypersensitive response RCA Interproscan
BP GO:0045892 negative regulation of DNA-templated transcription IDA Interproscan
BP GO:0048366 leaf development IMP Interproscan
BP GO:0048527 lateral root development IMP Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 60 106
IPR003340 B3_DNA-bd 188 291
No external refs found!