AT1G12820 (AFB3)

Aliases : AFB3

Description : auxin signaling F-box 3

Gene families : OG0000211 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000211_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G12820

Target	Alias	Description	ECC score	Gene Family Method
Adi_g023634	AFB2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g107960	TIR1	substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)...	0.03	OrthoFinder output from all 47 species
Aev_g04147	COI1	component *(COI) of jasmonic acid receptor complex &...	0.03	OrthoFinder output from all 47 species
Als_g01939	COI1	component *(COI) of jasmonic acid receptor complex &...	0.02	OrthoFinder output from all 47 species
Aspi01Gene17403.t1	COI1, Aspi01Gene17403	component *(COI) of jasmonic acid receptor complex &...	0.03	OrthoFinder output from all 47 species
Aspi01Gene60736.t1	AFB2, Aspi01Gene60736	substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)...	0.03	OrthoFinder output from all 47 species
GSVIVT01009126001	AFB5	Protein degradation.peptide tagging.Ubiquitin...	0.04	OrthoFinder output from all 47 species
MA_47869g0020	No alias	F-box protein FBX14 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
MA_78902g0010	AFB5	component TIR1/AFB of auxin receptor complex	0.04	OrthoFinder output from all 47 species
Spa_g18002	COI1	component *(COI) of jasmonic acid receptor complex &...	0.03	OrthoFinder output from all 47 species
Spa_g50974	AFB2	substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)...	0.02	OrthoFinder output from all 47 species
Zm00001e040776_P001	AFB2, Zm00001e040776	component TIR1/AFB of auxin receptor complex. component...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000096	sulfur amino acid metabolic process	None	Extended
BP	GO:0000097	sulfur amino acid biosynthetic process	None	Extended
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	RCA	Interproscan
BP	GO:0002237	response to molecule of bacterial origin	IEP	Interproscan
BP	GO:0002237	response to molecule of bacterial origin	RCA	Interproscan
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006555	methionine metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006790	sulfur compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007165	signal transduction	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0008652	amino acid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009066	aspartate family amino acid metabolic process	None	Extended
BP	GO:0009067	aspartate family amino acid biosynthetic process	None	Extended
BP	GO:0009086	methionine biosynthetic process	RCA	Interproscan
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009648	photoperiodism	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0010011	auxin binding	IGI	Interproscan
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010103	stomatal complex morphogenesis	RCA	Interproscan
BP	GO:0010152	pollen maturation	IGI	Interproscan
BP	GO:0010167	response to nitrate	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0021700	developmental maturation	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
MF	GO:0042562	hormone binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044272	sulfur compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048364	root development	None	Extended
BP	GO:0048437	floral organ development	None	Extended
BP	GO:0048443	stamen development	IGI	Interproscan
BP	GO:0048443	stamen development	RCA	Interproscan
BP	GO:0048527	lateral root development	IMP	Interproscan
BP	GO:0048528	post-embryonic root development	None	Extended
BP	GO:0048573	photoperiodism, flowering	RCA	Interproscan
BP	GO:0048827	phyllome development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070887	cellular response to chemical stimulus	None	Extended
BP	GO:0071241	cellular response to inorganic substance	None	Extended
BP	GO:0071249	cellular response to nitrate	IEP	Interproscan
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080022	primary root development	IMP	Interproscan
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090626	plant epidermis morphogenesis	None	Extended
BP	GO:0090696	post-embryonic plant organ development	None	Extended
BP	GO:0090698	post-embryonic plant morphogenesis	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901605	alpha-amino acid metabolic process	None	Extended
BP	GO:1901607	alpha-amino acid biosynthetic process	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901699	cellular response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1901701	cellular response to oxygen-containing compound	None	Extended
BP	GO:1902170	cellular response to reactive nitrogen species	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	HCCA
MF	GO:0004722	protein serine/threonine phosphatase activity	IEP	HCCA
MF	GO:0005509	calcium ion binding	IEP	HCCA
BP	GO:0006955	immune response	IEP	HCCA
BP	GO:0007267	cell-cell signaling	IEP	HCCA
BP	GO:0009615	response to virus	IEP	HCCA
BP	GO:0009616	RNAi-mediated antiviral immune response	IEP	HCCA
BP	GO:0010016	shoot system morphogenesis	IEP	HCCA
BP	GO:0010267	ta-siRNA processing	IEP	HCCA
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	HCCA
BP	GO:0016441	post-transcriptional gene silencing	IEP	HCCA
MF	GO:0016791	phosphatase activity	IEP	HCCA
BP	GO:0023052	signaling	IEP	HCCA
BP	GO:0030422	siRNA processing	IEP	HCCA
BP	GO:0031047	RNA-mediated gene silencing	IEP	HCCA
BP	GO:0035194	RNA-mediated post-transcriptional gene silencing	IEP	HCCA
BP	GO:0035196	miRNA processing	IEP	HCCA
BP	GO:0045087	innate immune response	IEP	HCCA
BP	GO:0048438	floral whorl development	IEP	HCCA
BP	GO:0048439	flower morphogenesis	IEP	HCCA
BP	GO:0051607	defense response to virus	IEP	HCCA
BP	GO:0070918	regulatory ncRNA processing	IEP	HCCA
BP	GO:0140546	defense response to symbiont	IEP	HCCA

No InterPro domains available for this sequence

External Links

No external refs found!

AT1G12820 (AFB3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation