AT1G12820 (AFB3)


Aliases : AFB3

Description : auxin signaling F-box 3


Gene families : OG0000211 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000211_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G12820

Target Alias Description ECC score Gene Family Method Actions
Adi_g023634 AFB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g107960 TIR1 substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... 0.03 OrthoFinder output from all 47 species
Aev_g04147 COI1 component *(COI) of jasmonic acid receptor complex &... 0.03 OrthoFinder output from all 47 species
Als_g01939 COI1 component *(COI) of jasmonic acid receptor complex &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene17403.t1 COI1, Aspi01Gene17403 component *(COI) of jasmonic acid receptor complex &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene60736.t1 AFB2, Aspi01Gene60736 substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... 0.03 OrthoFinder output from all 47 species
GSVIVT01009126001 AFB5 Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
MA_47869g0020 No alias F-box protein FBX14 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_78902g0010 AFB5 component TIR1/AFB of auxin receptor complex 0.04 OrthoFinder output from all 47 species
Spa_g18002 COI1 component *(COI) of jasmonic acid receptor complex &... 0.03 OrthoFinder output from all 47 species
Spa_g50974 AFB2 substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... 0.02 OrthoFinder output from all 47 species
Zm00001e040776_P001 AFB2, Zm00001e040776 component TIR1/AFB of auxin receptor complex. component... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation RCA Interproscan
BP GO:0002237 response to molecule of bacterial origin IEP Interproscan
BP GO:0002237 response to molecule of bacterial origin RCA Interproscan
MF GO:0004842 ubiquitin-protein transferase activity ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0007165 signal transduction RCA Interproscan
BP GO:0009086 methionine biosynthetic process RCA Interproscan
MF GO:0010011 auxin binding IGI Interproscan
BP GO:0010103 stomatal complex morphogenesis RCA Interproscan
BP GO:0010152 pollen maturation IGI Interproscan
BP GO:0048443 stamen development IGI Interproscan
BP GO:0048443 stamen development RCA Interproscan
BP GO:0048527 lateral root development IMP Interproscan
BP GO:0048573 photoperiodism, flowering RCA Interproscan
BP GO:0071249 cellular response to nitrate IEP Interproscan
BP GO:0080022 primary root development IMP Interproscan
Type GO Term Name Evidence Source
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0004722 protein serine/threonine phosphatase activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0006955 immune response IEP HCCA
BP GO:0007267 cell-cell signaling IEP HCCA
BP GO:0009615 response to virus IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0010016 shoot system morphogenesis IEP HCCA
BP GO:0010267 ta-siRNA processing IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
BP GO:0016441 post-transcriptional gene silencing IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
BP GO:0023052 signaling IEP HCCA
BP GO:0030422 siRNA processing IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0035194 RNA-mediated post-transcriptional gene silencing IEP HCCA
BP GO:0035196 miRNA processing IEP HCCA
BP GO:0045087 innate immune response IEP HCCA
BP GO:0048438 floral whorl development IEP HCCA
BP GO:0048439 flower morphogenesis IEP HCCA
BP GO:0051607 defense response to virus IEP HCCA
BP GO:0070918 regulatory ncRNA processing IEP HCCA
BP GO:0140546 defense response to symbiont IEP HCCA

No InterPro domains available for this sequence

No external refs found!