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  5. AT1G12620

AT1G12620


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG0010196 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0010196_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G12620
Cluster HCCA: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00263570 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g62590... 0.06 OrthoFinder output from all 47 species
AT1G62590 No alias pentatricopeptide (PPR) repeat-containing protein 0.04 OrthoFinder output from all 47 species
AT1G62720 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 OrthoFinder output from all 47 species
AT1G63070 No alias pentatricopeptide (PPR) repeat-containing protein 0.05 OrthoFinder output from all 47 species
AT5G16640 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G41170 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0030246 carbohydrate binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 59 117
IPR002885 Pentatricopeptide_repeat 242 274
IPR002885 Pentatricopeptide_repeat 137 169
IPR002885 Pentatricopeptide_repeat 564 593
IPR002885 Pentatricopeptide_repeat 175 224
IPR002885 Pentatricopeptide_repeat 281 325
IPR002885 Pentatricopeptide_repeat 350 399
IPR002885 Pentatricopeptide_repeat 491 539
IPR002885 Pentatricopeptide_repeat 421 469
No external refs found!