AT1G11580 (ATPMEPCRA, PMEPCRA)

Aliases : ATPMEPCRA, PMEPCRA

Description : methylesterase PCR A

Gene families : OG0000147 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000147_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G11580

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00101250	ATPMEPCRA,...	Cell wall.pectin.homogalacturonan.modification and...	0.02	OrthoFinder output from all 47 species
AMTR_s00038p00046180	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.05	OrthoFinder output from all 47 species
AMTR_s00129p00070300	PME1, ATPME1,...	Cell wall.pectin.homogalacturonan.modification and...	0.03	OrthoFinder output from all 47 species
AMTR_s00129p00073090	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.04	OrthoFinder output from all 47 species
AT1G53830	ATPME2, PME2	pectin methylesterase 2	0.04	OrthoFinder output from all 47 species
AT2G43050	ATPMEPCRD	Plant invertase/pectin methylesterase inhibitor superfamily	0.08	OrthoFinder output from all 47 species
AT3G10720	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.06	OrthoFinder output from all 47 species
AT5G04970	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.04	OrthoFinder output from all 47 species
AT5G20860	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.06	OrthoFinder output from all 47 species
AT5G51490	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.03	OrthoFinder output from all 47 species
Aev_g09671	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.04	OrthoFinder output from all 47 species
Ala_g27377	ATPME2, PME2	EC_3.1 hydrolase acting on ester bond & original...	0.04	OrthoFinder output from all 47 species
Azfi_s0205.g057784	ATPME2, PME2	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
Dac_g13438	ATPME2, PME2	EC_3.1 hydrolase acting on ester bond & original...	0.05	OrthoFinder output from all 47 species
Dac_g44370	ATPME2, PME2	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
Dcu_g01562	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.04	OrthoFinder output from all 47 species
Dcu_g12104	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Dcu_g13634	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.04	OrthoFinder output from all 47 species
Dde_g48560	ATPME2, PME2	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Ehy_g09868	ATPME2, PME2	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Ehy_g15129	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01014999001	ATPME3, PME3	Cell wall.pectin.homogalacturonan.modification and...	0.07	OrthoFinder output from all 47 species
GSVIVT01018620001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.04	OrthoFinder output from all 47 species
GSVIVT01027356001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.04	OrthoFinder output from all 47 species
GSVIVT01031165001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.02	OrthoFinder output from all 47 species
GSVIVT01037349001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.03	OrthoFinder output from all 47 species
Gb_03174	ATPME3, PME3	pectin methylesterase	0.05	OrthoFinder output from all 47 species
Gb_21388	ATPMEPCRF, PMEPCRF	pectin methylesterase	0.06	OrthoFinder output from all 47 species
Gb_28387	ATPME3, PME3	pectin methylesterase	0.04	OrthoFinder output from all 47 species
LOC_Os02g54190.1	PME61, LOC_Os02g54190	pectin methylesterase	0.03	OrthoFinder output from all 47 species
MA_150928g0020	ATPMEPCRF, PMEPCRF	pectin methylesterase	0.04	OrthoFinder output from all 47 species
MA_158002g0020	ATPMEPCRF, PMEPCRF	pectin methylesterase	0.03	OrthoFinder output from all 47 species
MA_84680g0010	ATPME2, PME2	pectin methylesterase	0.04	OrthoFinder output from all 47 species
MA_8928694g0010	No alias	Probable pectinesterase/pectinesterase inhibitor 32...	0.02	OrthoFinder output from all 47 species
MA_931259g0010	No alias	pectin methylesterase	0.06	OrthoFinder output from all 47 species
MA_9367g0020	ATPME2, PME2	pectin methylesterase	0.05	OrthoFinder output from all 47 species
MA_96515g0010	ATPMEPCRB	pectin methylesterase	0.03	OrthoFinder output from all 47 species
Msp_g07772	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Msp_g25874	ATPME2, PME2	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Ore_g44479	ATPMEPCRB	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Pir_g22505	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.04	OrthoFinder output from all 47 species
Pp3c8_3840V3.1	Pp3c8_3840	Plant invertase/pectin methylesterase inhibitor superfamily	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g000947	No alias	not classified & original description: CDS=1-831	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0086.g018433	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
Smo114014	ATPMEPCRF, PMEPCRF	Cell wall.pectin.homogalacturonan.modification and...	0.03	OrthoFinder output from all 47 species
Smo266995	ATPME2, PME2	Cell wall.pectin.homogalacturonan.modification and...	0.04	OrthoFinder output from all 47 species
Solyc03g083840.3.1	Solyc03g083840	pectin methylesterase	0.03	OrthoFinder output from all 47 species
Solyc07g064190.3.1	ATPMEPCRA,...	pectin methylesterase	0.02	OrthoFinder output from all 47 species
Tin_g02036	ATPMEPCRF, PMEPCRF	EC_3.1 hydrolase acTing on ester bond & original...	0.04	OrthoFinder output from all 47 species
Zm00001e011069_P001	PME61, Zm00001e011069	pectin methylesterase	0.05	OrthoFinder output from all 47 species
Zm00001e017514_P001	ATPMEPCRB, Zm00001e017514	pectin methylesterase	0.02	OrthoFinder output from all 47 species
Zm00001e017515_P001	ATPME2, PME2,...	pectin methylesterase	0.03	OrthoFinder output from all 47 species
Zm00001e022184_P001	PME44, ATPME44,...	pectin methylesterase	0.07	OrthoFinder output from all 47 species
Zm00001e026790_P001	ATPMEPCRB, Zm00001e026790	pectin methylesterase	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005618	cell wall	IDA	Interproscan
CC	GO:0005774	vacuolar membrane	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0006073	cellular glucan metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009505	plant-type cell wall	ISS	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009617	response to bacterium	IEP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010383	cell wall polysaccharide metabolic process	None	Extended
BP	GO:0010393	galacturonan metabolic process	None	Extended
CC	GO:0016020	membrane	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
BP	GO:0030243	cellulose metabolic process	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
MF	GO:0030599	pectinesterase activity	ISS	Interproscan
CC	GO:0031090	organelle membrane	None	Extended
BP	GO:0034406	cell wall beta-glucan metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
BP	GO:0044036	cell wall macromolecule metabolic process	None	Extended
BP	GO:0044042	glucan metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0045488	pectin metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051273	beta-glucan metabolic process	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0052541	plant-type cell wall cellulose metabolic process	RCA	Interproscan
BP	GO:0052546	cell wall pectin metabolic process	RCA	Interproscan
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR006501	Pectinesterase_inhib_dom	56	203
IPR000070	Pectinesterase_cat	246	542

External Links

No external refs found!

AT1G11580 (ATPMEPCRA, PMEPCRA)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation