AT1G11100

Description : SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related

Gene families : OG0003006 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003006_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G11100
Cluster	HCCA: Cluster_98

Target	Alias	Description	ECC score	Gene Family Method
AT3G20010	No alias	SNF2 domain-containing protein / helicase...	0.03	OrthoFinder output from all 47 species
Aev_g34337	No alias	chromatin remodeling factor *(Ris1) & original description: none	0.03	OrthoFinder output from all 47 species
MA_4534g0010	No alias	Helicase-like transcription factor CHR28 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
BP	GO:0006952	defense response	IEP	HCCA
BP	GO:0009607	response to biotic stimulus	IEP	HCCA
BP	GO:0009615	response to virus	IEP	HCCA
BP	GO:0009617	response to bacterium	IEP	HCCA
MF	GO:0035197	siRNA binding	IEP	HCCA
BP	GO:0042742	defense response to bacterium	IEP	HCCA
BP	GO:0043207	response to external biotic stimulus	IEP	HCCA
BP	GO:0044419	biological process involved in interspecies interaction between organisms	IEP	HCCA
BP	GO:0051607	defense response to virus	IEP	HCCA
BP	GO:0051707	response to other organism	IEP	HCCA
MF	GO:0061980	regulatory RNA binding	IEP	HCCA
BP	GO:0098542	defense response to other organism	IEP	HCCA
BP	GO:0140546	defense response to symbiont	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR018957	Znf_C3HC4_RING-type	919	956
IPR001650	Helicase_C	1069	1168
IPR000330	SNF2_N	556	884

External Links

No external refs found!