1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT1G09880

AT1G09880


Description : Rhamnogalacturonate lyase family protein


Gene families : OG0001248 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001248_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G09880

Target Alias Description ECC score Gene Family Method Actions
AT4G37950 No alias Rhamnogalacturonate lyase family protein 0.05 OrthoFinder output from all 47 species
Ceric.18G076800.1 Ceric.18G076800 not classified & original description: pacid=50622194... 0.03 OrthoFinder output from all 47 species
LOC_Os08g44040.1 LOC_Os08g44040 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os12g03790.1 LOC_Os12g03790 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g44605 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo413798 No alias No description available 0.03 OrthoFinder output from all 47 species
Solyc04g014430.2.1 Solyc04g014430 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc11g011300.2.1 Solyc11g011300 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e013992_P006 Zm00001e013992 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005576 extracellular region ISM Interproscan
MF GO:0016829 lyase activity ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR029413 RG-lyase_II 343 415
IPR010325 Rhamnogal_lyase 1 189
IPR029411 RG-lyase_III 429 619
No external refs found!