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AT1G08700 (PS1)


Aliases : PS1

Description : Presenilin-1


Gene families : OG0002697 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002697_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G08700
Cluster HCCA: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
Cba_g03253 PS1 catalytic component *(PS) of gamma secretase complex &... 0.02 OrthoFinder output from all 47 species
Dac_g04649 PS2 catalytic component *(PS) of gamma secretase complex &... 0.02 OrthoFinder output from all 47 species
Ehy_g03602 PS2 catalytic component *(PS) of gamma secretase complex &... 0.03 OrthoFinder output from all 47 species
Ore_g08131 PS2 catalytic component *(PS) of gamma secretase complex &... 0.03 OrthoFinder output from all 47 species
Ore_g19541 PS2 catalytic component *(PS) of gamma secretase complex &... 0.02 OrthoFinder output from all 47 species
Pir_g05850 PS1 catalytic component *(PS) of gamma secretase complex &... 0.03 OrthoFinder output from all 47 species
Tin_g19417 PS2 catalytic component *(PS) of gamma secretase complex &... 0.03 OrthoFinder output from all 47 species
Zm00001e017375_P001 PS1, Zm00001e017375 catalytic component PS of gamma secretase complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IBA Interproscan
BP GO:0008152 metabolic process IBA Interproscan
CC GO:0016020 membrane ISS Interproscan
BP GO:0019722 calcium-mediated signaling RCA Interproscan
BP GO:0035556 intracellular signal transduction ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0004766 spermidine synthase activity IEP HCCA
CC GO:0005635 nuclear envelope IEP HCCA
CC GO:0005819 spindle IEP HCCA
CC GO:0005829 cytosol IEP HCCA
CC GO:0005834 heterotrimeric G-protein complex IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006595 polyamine metabolic process IEP HCCA
BP GO:0006596 polyamine biosynthetic process IEP HCCA
BP GO:0006997 nucleus organization IEP HCCA
BP GO:0008216 spermidine metabolic process IEP HCCA
BP GO:0008295 spermidine biosynthetic process IEP HCCA
BP GO:0009309 amine biosynthetic process IEP HCCA
CC GO:0009524 phragmoplast IEP HCCA
BP GO:0009560 embryo sac egg cell differentiation IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
BP GO:0016926 protein desumoylation IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0042401 biogenic amine biosynthetic process IEP HCCA
BP GO:0048825 cotyledon development IEP HCCA
BP GO:0050665 hydrogen peroxide biosynthetic process IEP HCCA
BP GO:0051301 cell division IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP HCCA
BP GO:0090435 protein localization to nuclear envelope IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
BP GO:1903409 reactive oxygen species biosynthetic process IEP HCCA
CC GO:1905360 GTPase complex IEP HCCA
InterPro domains Description Start Stop
IPR001108 Peptidase_A22A 12 443
No external refs found!