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AT1G08610


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG0012890 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0012890_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G08610

Target Alias Description ECC score Gene Family Method Actions
Gb_17857 No alias splicing factor (WSL4) 0.03 OrthoFinder output from all 47 species
Gb_17872 No alias splicing factor (WSL4) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016553 base conversion or substitution editing IEP HCCA
BP GO:0016554 cytidine to uridine editing IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 490 520
IPR002885 Pentatricopeptide_repeat 141 169
IPR002885 Pentatricopeptide_repeat 172 219
IPR002885 Pentatricopeptide_repeat 417 466
IPR002885 Pentatricopeptide_repeat 347 395
IPR002885 Pentatricopeptide_repeat 277 326
No external refs found!