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  5. AT1G08400

AT1G08400


Description : RINT-1 / TIP-1 family


Gene families : OG0006233 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006233_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G08400
Cluster HCCA: Cluster_86

Target Alias Description ECC score Gene Family Method Actions
Cre09.g413650 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g44940 MAG2 component *(MAG2) of DSL1 (Depends-on-SLY1) complex &... 0.02 OrthoFinder output from all 47 species
MA_10427391g0010 MAG2 component MAG2 of DSL1 (Depends-on-SLY1) complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0009507 chloroplast ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0003002 regionalization IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
MF GO:0008131 primary amine oxidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0009956 radial pattern formation IEP HCCA
BP GO:0010496 intercellular transport IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0031048 RNA-mediated heterochromatin formation IEP HCCA
BP GO:0031507 heterochromatin formation IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
BP GO:0040029 epigenetic regulation of gene expression IEP HCCA
BP GO:0045132 meiotic chromosome segregation IEP HCCA
BP GO:0045814 negative regulation of gene expression, epigenetic IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051568 histone H3-K4 methylation IEP HCCA
BP GO:0070828 heterochromatin organization IEP HCCA
BP GO:0090057 root radial pattern formation IEP HCCA
BP GO:0098813 nuclear chromosome segregation IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR007528 RINT1_Tip20 569 797
IPR007528 RINT1_Tip20 293 482
No external refs found!