AT1G07940

Description : GTP binding Elongation factor Tu family protein

Gene families : OG0000296 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000296_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G07940

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00066p00072310	evm_27.TU.AmTr_v1...	Protein biosynthesis.translation elongation.eEF1A...	0.07	OrthoFinder output from all 47 species
Aev_g06624	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.04	OrthoFinder output from all 47 species
Ala_g10935	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.04	OrthoFinder output from all 47 species
Als_g11645	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.04	OrthoFinder output from all 47 species
Als_g26660	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.05	OrthoFinder output from all 47 species
Als_g31007	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g51450	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.07	OrthoFinder output from all 47 species
Aop_g09508	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
Cba_g03670	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.09G081400.1	Ceric.09G081400	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.07	OrthoFinder output from all 47 species
Ceric.11G084400.1	Ceric.11G084400	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.04	OrthoFinder output from all 47 species
Ceric.31G073700.1	Ceric.31G073700	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.04	OrthoFinder output from all 47 species
Dcu_g09531	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.04	OrthoFinder output from all 47 species
Dcu_g10803	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.05	OrthoFinder output from all 47 species
LOC_Os03g08010.1	LOC_Os03g08010	aminoacyl-tRNA binding factor (eEF1A)	0.04	OrthoFinder output from all 47 species
LOC_Os03g08020.1	LOC_Os03g08020	aminoacyl-tRNA binding factor (eEF1A)	0.04	OrthoFinder output from all 47 species
LOC_Os03g08050.1	LOC_Os03g08050	aminoacyl-tRNA binding factor (eEF1A)	0.04	OrthoFinder output from all 47 species
Len_g51156	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.04	OrthoFinder output from all 47 species
MA_505653g0010	No alias	Elongation factor 1-alpha OS=Triticum aestivum...	0.02	OrthoFinder output from all 47 species
Mp3g23400.1	No alias	aminoacyl-tRNA binding factor (eEF1A)	0.08	OrthoFinder output from all 47 species
Msp_g06541	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
Msp_g06564	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
Msp_g21467	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.07	OrthoFinder output from all 47 species
Msp_g29578	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g12703	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
Pp3c2_6770V3.1	Pp3c2_6770	GTP binding Elongation factor Tu family protein	0.04	OrthoFinder output from all 47 species
Sam_g16999	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.08	OrthoFinder output from all 47 species
Sam_g28089	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Sam_g29350	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.06	OrthoFinder output from all 47 species
Sam_g31306	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Smo171512	No alias	Protein biosynthesis.translation elongation.eEF1A...	0.04	OrthoFinder output from all 47 species
Smo270693	No alias	Protein biosynthesis.translation elongation.eEF1A...	0.03	OrthoFinder output from all 47 species
Solyc06g005060.3.1	Solyc06g005060	aminoacyl-tRNA binding factor (eEF1A)	0.1	OrthoFinder output from all 47 species
Solyc06g009970.3.1	Solyc06g009970	aminoacyl-tRNA binding factor (eEF1A)	0.23	OrthoFinder output from all 47 species
Solyc11g069097.1.1	Solyc11g069097	aminoacyl-tRNA binding factor (eEF1A)	0.1	OrthoFinder output from all 47 species
Solyc11g150146.1.1	Solyc11g150146	aminoacyl-tRNA binding factor (eEF1A)	0.32	OrthoFinder output from all 47 species
Spa_g46936	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
Spa_g50271	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
Spa_g50272	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.04	OrthoFinder output from all 47 species
Tin_g11763	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.05	OrthoFinder output from all 47 species
Zm00001e026762_P001	Zm00001e026762	aminoacyl-tRNA binding factor (eEF1A)	0.1	OrthoFinder output from all 47 species
Zm00001e026763_P003	Zm00001e026763	aminoacyl-tRNA binding factor (eEF1A)	0.11	OrthoFinder output from all 47 species
Zm00001e030598_P002	Zm00001e030598	aminoacyl-tRNA binding factor (eEF1A)	0.03	OrthoFinder output from all 47 species
Zm00001e031390_P004	Zm00001e031390	aminoacyl-tRNA binding factor (eEF1A)	0.08	OrthoFinder output from all 47 species
Zm00001e031391_P002	Zm00001e031391	aminoacyl-tRNA binding factor (eEF1A)	0.07	OrthoFinder output from all 47 species
Zm00001e031407_P001	Zm00001e031407	aminoacyl-tRNA binding factor (eEF1A)	0.08	OrthoFinder output from all 47 species
Zm00001e037355_P001	Zm00001e037355	aminoacyl-tRNA binding factor (eEF1A)	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003746	translation elongation factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0005516	calmodulin binding	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005739	mitochondrion	IDA	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
CC	GO:0016020	membrane	None	Extended
CC	GO:0030054	cell junction	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0045182	translation regulator activity	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
MF	GO:0090079	translation regulator activity, nucleic acid binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0005507	copper ion binding	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005743	mitochondrial inner membrane	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
BP	GO:0005996	monosaccharide metabolic process	IEP	HCCA
BP	GO:0006006	glucose metabolic process	IEP	HCCA
BP	GO:0006007	glucose catabolic process	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0006094	gluconeogenesis	IEP	HCCA
BP	GO:0006096	glycolytic process	IEP	HCCA
BP	GO:0006098	pentose-phosphate shunt	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006165	nucleoside diphosphate phosphorylation	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006739	NADP metabolic process	IEP	HCCA
BP	GO:0006740	NADPH regeneration	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006757	ATP generation from ADP	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006970	response to osmotic stress	IEP	HCCA
BP	GO:0008219	cell death	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009132	nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009135	purine nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009185	ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0009628	response to abiotic stimulus	IEP	HCCA
BP	GO:0009651	response to salt stress	IEP	HCCA
BP	GO:0009735	response to cytokinin	IEP	HCCA
BP	GO:0010035	response to inorganic substance	IEP	HCCA
BP	GO:0010038	response to metal ion	IEP	HCCA
BP	GO:0012501	programmed cell death	IEP	HCCA
BP	GO:0016052	carbohydrate catabolic process	IEP	HCCA
BP	GO:0019318	hexose metabolic process	IEP	HCCA
BP	GO:0019319	hexose biosynthetic process	IEP	HCCA
BP	GO:0019320	hexose catabolic process	IEP	HCCA
BP	GO:0019362	pyridine nucleotide metabolic process	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
CC	GO:0019866	organelle inner membrane	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
CC	GO:0031966	mitochondrial membrane	IEP	HCCA
BP	GO:0034050	programmed cell death induced by symbiont	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0044282	small molecule catabolic process	IEP	HCCA
BP	GO:0044403	biological process involved in symbiotic interaction	IEP	HCCA
BP	GO:0046031	ADP metabolic process	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046364	monosaccharide biosynthetic process	IEP	HCCA
BP	GO:0046365	monosaccharide catabolic process	IEP	HCCA
BP	GO:0046496	nicotinamide nucleotide metabolic process	IEP	HCCA
BP	GO:0046686	response to cadmium ion	IEP	HCCA
BP	GO:0046939	nucleotide phosphorylation	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051156	glucose 6-phosphate metabolic process	IEP	HCCA
BP	GO:0051702	biological process involved in interaction with symbiont	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:0072524	pyridine-containing compound metabolic process	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004160	Transl_elong_EFTu/EF1A_C	322	429
IPR000795	T_Tr_GTP-bd_dom	7	222
IPR004161	EFTu-like_2	248	313

External Links

No external refs found!

AT1G07940

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation