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  5. AT1G07740

AT1G07740


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0001250 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001250_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G07740
Cluster HCCA: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00107660 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
AMTR_s00143p00105190 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AMTR_s00221p00020810 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g16420,... 0.04 OrthoFinder output from all 47 species
Ceric.22G014000.1 Ceric.22G014000 not classified & original description: pacid=50615208... 0.04 OrthoFinder output from all 47 species
GSVIVT01008016001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Gb_12002 No alias Pentatricopeptide repeat-containing protein At3g48810... 0.03 OrthoFinder output from all 47 species
Gb_21920 No alias Pentatricopeptide repeat-containing protein At1g07740,... 0.04 OrthoFinder output from all 47 species
LOC_Os02g42210.1 LOC_Os02g42210 Pentatricopeptide repeat-containing protein At4g36680,... 0.03 OrthoFinder output from all 47 species
LOC_Os05g04160.1 LOC_Os05g04160 Pentatricopeptide repeat-containing protein At3g48810... 0.04 OrthoFinder output from all 47 species
LOC_Os08g39050.1 LOC_Os08g39050 Pentatricopeptide repeat-containing protein At1g80150,... 0.04 OrthoFinder output from all 47 species
MA_17644g0010 No alias Pentatricopeptide repeat-containing protein At2g17525,... 0.03 OrthoFinder output from all 47 species
MA_525159g0010 No alias Pentatricopeptide repeat-containing protein At1g07740,... 0.04 OrthoFinder output from all 47 species
MA_57592g0010 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.03 OrthoFinder output from all 47 species
MA_71816g0020 No alias Pentatricopeptide repeat-containing protein At3g14580,... 0.04 OrthoFinder output from all 47 species
MA_742945g0010 No alias Pentatricopeptide repeat-containing protein At5g16420,... 0.04 OrthoFinder output from all 47 species
MA_80720g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
MA_90507g0010 No alias Pentatricopeptide repeat-containing protein At2g06000... 0.03 OrthoFinder output from all 47 species
Solyc02g077650.2.1 Solyc02g077650 Pentatricopeptide repeat-containing protein At5g46100... 0.13 OrthoFinder output from all 47 species
Solyc05g012250.3.1 Solyc05g012250 Pentatricopeptide repeat-containing protein At1g80150,... 0.03 OrthoFinder output from all 47 species
Solyc12g014330.1.1 Solyc12g014330 Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Solyc12g035170.3.1 Solyc12g035170 Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Zm00001e015190_P001 Zm00001e015190 Pentatricopeptide repeat-containing protein At2g18520,... 0.03 OrthoFinder output from all 47 species
Zm00001e019591_P001 PPR336, Zm00001e019591 PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.06 OrthoFinder output from all 47 species
Zm00001e027557_P001 Zm00001e027557 Pentatricopeptide repeat-containing protein At3g48810... 0.09 OrthoFinder output from all 47 species
Zm00001e028732_P001 Zm00001e028732 Pentatricopeptide repeat-containing protein At3g09060... 0.04 OrthoFinder output from all 47 species
Zm00001e028938_P001 Zm00001e028938 Pentatricopeptide repeat-containing protein At1g55890,... 0.02 OrthoFinder output from all 47 species
Zm00001e034625_P001 Zm00001e034625 Putative pentatricopeptide repeat-containing protein... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP HCCA
CC GO:0000930 gamma-tubulin complex IEP HCCA
MF GO:0004407 histone deacetylase activity IEP HCCA
CC GO:0005635 nuclear envelope IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0007020 microtubule nucleation IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
CC GO:0009898 cytoplasmic side of plasma membrane IEP HCCA
BP GO:0010212 response to ionizing radiation IEP HCCA
BP GO:0010332 response to gamma radiation IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP HCCA
MF GO:0019213 deacetylase activity IEP HCCA
BP GO:0031590 wybutosine metabolic process IEP HCCA
BP GO:0031591 wybutosine biosynthetic process IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0032204 regulation of telomere maintenance IEP HCCA
MF GO:0033558 protein lysine deacetylase activity IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
BP GO:0043247 telomere maintenance in response to DNA damage IEP HCCA
CC GO:0098552 side of membrane IEP HCCA
CC GO:0098562 cytoplasmic side of membrane IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
BP GO:1901657 glycosyl compound metabolic process IEP HCCA
BP GO:1901659 glycosyl compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 121 147
IPR002885 Pentatricopeptide_repeat 398 426
IPR002885 Pentatricopeptide_repeat 293 322
IPR002885 Pentatricopeptide_repeat 324 373
IPR002885 Pentatricopeptide_repeat 219 267
IPR002885 Pentatricopeptide_repeat 153 196
No external refs found!