AT1G07410 (RABA2b, ATRAB-A2B,...)

Aliases : RABA2b, ATRAB-A2B, ATRABA2B, RAB-A2B

Description : RAB GTPase homolog A2B

Gene families : OG0000247 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000247_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G07410
Cluster	HCCA: Cluster_15

Target	Alias	Description	ECC score	Gene Family Method
AT2G33870	ArRABA1h	RAB GTPase homolog A1H	0.04	OrthoFinder output from all 47 species
Adi_g015797	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g078039	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g09261	AtRABA5a, RABA5a	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g30591	RABA2b,...	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Als_g03446	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g17341	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0013.g013094	AtRABA1f, RABA1f	A-class RAB GTPase & original description: CDS=414-1064	0.03	OrthoFinder output from all 47 species
Azfi_s0158.g053866	ATRABA2A,...	A-class RAB GTPase & original description: CDS=282-950	0.03	OrthoFinder output from all 47 species
Ceric.34G030300.1	AtRABA1f,...	A-class RAB GTPase & original description:...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020961.97	AtRABA1e, RABA1e	Vesicle trafficking.regulation of membrane tethering and...	0.02	OrthoFinder output from all 47 species
Cre03.g189250	ATRABA2A,...	Vesicle trafficking.regulation of membrane tethering and...	0.03	OrthoFinder output from all 47 species
Dac_g05558	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
LOC_Os07g44040.1	AtRABA5a,...	A-class RAB GTPase	0.04	OrthoFinder output from all 47 species
LOC_Os08g41340.1	AtRABA5d,...	A-class RAB GTPase	0.07	OrthoFinder output from all 47 species
LOC_Os09g15790.1	AtRABA1f,...	A-class RAB GTPase	0.04	OrthoFinder output from all 47 species
Pnu_g10152	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g08711	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g27739	No alias	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Solyc03g006270.3.1	AtRABA1f,...	A-class RAB GTPase	0.03	OrthoFinder output from all 47 species
Zm00001e033825_P001	AtRABA1f,...	A-class RAB GTPase	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
BP	GO:0000302	response to reactive oxygen species	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005768	endosome	IDA	Interproscan
CC	GO:0005794	Golgi apparatus	ISM	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0006457	protein folding	RCA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006979	response to oxidative stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009408	response to heat	RCA	Interproscan
BP	GO:0009416	response to light stimulus	None	Extended
CC	GO:0009504	cell plate	IDA	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009642	response to light intensity	None	Extended
BP	GO:0009644	response to high light intensity	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016192	vesicle-mediated transport	RCA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
CC	GO:0031410	cytoplasmic vesicle	None	Extended
CC	GO:0031982	vesicle	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042542	response to hydrogen peroxide	RCA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0097708	intracellular vesicle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004439	phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	IEP	HCCA
MF	GO:0005200	structural constituent of cytoskeleton	IEP	HCCA
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
CC	GO:0005856	cytoskeleton	IEP	HCCA
BP	GO:0009664	plant-type cell wall organization	IEP	HCCA
MF	GO:0009672	auxin:proton symporter activity	IEP	HCCA
BP	GO:0009827	plant-type cell wall modification	IEP	HCCA
BP	GO:0009914	hormone transport	IEP	HCCA
BP	GO:0009926	auxin polar transport	IEP	HCCA
BP	GO:0009966	regulation of signal transduction	IEP	HCCA
BP	GO:0010252	auxin homeostasis	IEP	HCCA
BP	GO:0010315	auxin export across the plasma membrane	IEP	HCCA
BP	GO:0010646	regulation of cell communication	IEP	HCCA
BP	GO:0010928	regulation of auxin mediated signaling pathway	IEP	HCCA
MF	GO:0015293	symporter activity	IEP	HCCA
MF	GO:0015294	solute:monoatomic cation symporter activity	IEP	HCCA
MF	GO:0015295	solute:proton symporter activity	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016311	dephosphorylation	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
BP	GO:0019751	polyol metabolic process	IEP	HCCA
BP	GO:0023051	regulation of signaling	IEP	HCCA
BP	GO:0032957	inositol trisphosphate metabolic process	IEP	HCCA
MF	GO:0034593	phosphatidylinositol bisphosphate phosphatase activity	IEP	HCCA
MF	GO:0034595	phosphatidylinositol phosphate 5-phosphatase activity	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
BP	GO:0043647	inositol phosphate metabolic process	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
BP	GO:0046164	alcohol catabolic process	IEP	HCCA
BP	GO:0046174	polyol catabolic process	IEP	HCCA
BP	GO:0046434	organophosphate catabolic process	IEP	HCCA
BP	GO:0046838	phosphorylated carbohydrate dephosphorylation	IEP	HCCA
BP	GO:0046855	inositol phosphate dephosphorylation	IEP	HCCA
BP	GO:0048868	pollen tube development	IEP	HCCA
MF	GO:0052866	phosphatidylinositol phosphate phosphatase activity	IEP	HCCA
BP	GO:0060918	auxin transport	IEP	HCCA
BP	GO:0071545	inositol phosphate catabolic process	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
MF	GO:0080161	auxin transmembrane transporter activity	IEP	HCCA
MF	GO:0106019	phosphatidylinositol-4,5-bisphosphate phosphatase activity	IEP	HCCA
BP	GO:0140115	export across plasma membrane	IEP	HCCA
BP	GO:0140352	export from cell	IEP	HCCA
BP	GO:1901616	organic hydroxy compound catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	14	174

External Links

No external refs found!

AT1G07410 (RABA2b, ATRAB-A2B,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation