Description : FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: inflorescence meristem, petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G18570.1); Has 288 Blast hits to 260 proteins in 50 species: Archae - 0; Bacteria - 8; Metazoa - 27; Fungi - 15; Plants - 163; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
Gene families : OG0001103 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001103_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AT1G07120 | |
Cluster | HCCA: Cluster_19 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00045p00113980 | evm_27.TU.AmTr_v1... | Protein CHUP1, chloroplastic OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
AMTR_s00155p00024540 | CHUP1,... | Protein CHUP1, chloroplastic OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
AT1G48280 | No alias | hydroxyproline-rich glycoprotein family protein | 0.04 | OrthoFinder output from all 47 species | |
Azfi_s0392.g067767 | CHUP1 | not classified & original description: CDS=159-2696 | 0.03 | OrthoFinder output from all 47 species | |
Cba_g24662 | CHUP1 | motility factor *(CHUP) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ehy_g07890 | CHUP1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ehy_g22192 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01017698001 | No alias | Protein CHUP1, chloroplastic OS=Arabidopsis thaliana | 0.15 | OrthoFinder output from all 47 species | |
GSVIVT01021189001 | No alias | Protein CHUP1, chloroplastic OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01024701001 | No alias | Protein CHUP1, chloroplastic OS=Arabidopsis thaliana | 0.05 | OrthoFinder output from all 47 species | |
Gb_08802 | CHUP1 | regulatory protein (IPGA) of cortical microtubule organisation | 0.03 | OrthoFinder output from all 47 species | |
Gb_35748 | CHUP1 | regulatory protein (IPGA) of cortical microtubule organisation | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os01g46340.1 | LOC_Os01g46340 | regulatory protein (IPGA) of cortical microtubule organisation | 0.07 | OrthoFinder output from all 47 species | |
LOC_Os05g49820.1 | LOC_Os05g49820 | regulatory protein (IPGA) of cortical microtubule organisation | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os08g03560.1 | CHUP1, LOC_Os08g03560 | Protein CHUP1, chloroplastic OS=Arabidopsis thaliana... | 0.03 | OrthoFinder output from all 47 species | |
MA_5633g0010 | CHUP1 | Protein CHUP1, chloroplastic OS=Arabidopsis thaliana... | 0.03 | OrthoFinder output from all 47 species | |
Msp_g21271 | CHUP1 | motility factor *(CHUP) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Nbi_g32646 | CHUP1 | motility factor *(CHUP) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Solyc02g069560.3.1 | CHUP1, Solyc02g069560 | Protein CHUP1, chloroplastic OS=Arabidopsis thaliana... | 0.04 | OrthoFinder output from all 47 species | |
Spa_g39670 | CHUP1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e001328_P002 | Zm00001e001328 | Protein CHUP1, chloroplastic OS=Arabidopsis thaliana... | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e020303_P001 | Zm00001e020303 | regulatory protein (IPGA) of cortical microtubule organisation | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e032492_P004 | Zm00001e032492 | regulatory protein (IPGA) of cortical microtubule organisation | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003674 | molecular_function | ND | Interproscan |
BP | GO:0008150 | biological_process | ND | Interproscan |
CC | GO:0009507 | chloroplast | ISM | Interproscan |
CC | GO:0009941 | chloroplast envelope | IDA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000271 | polysaccharide biosynthetic process | IEP | HCCA |
CC | GO:0005885 | Arp2/3 protein complex | IEP | HCCA |
BP | GO:0005975 | carbohydrate metabolic process | IEP | HCCA |
BP | GO:0005976 | polysaccharide metabolic process | IEP | HCCA |
BP | GO:0008152 | metabolic process | IEP | HCCA |
BP | GO:0009058 | biosynthetic process | IEP | HCCA |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0009808 | lignin metabolic process | IEP | HCCA |
BP | GO:0009809 | lignin biosynthetic process | IEP | HCCA |
BP | GO:0009832 | plant-type cell wall biogenesis | IEP | HCCA |
BP | GO:0009834 | plant-type secondary cell wall biogenesis | IEP | HCCA |
BP | GO:0009891 | positive regulation of biosynthetic process | IEP | HCCA |
BP | GO:0009893 | positive regulation of metabolic process | IEP | HCCA |
BP | GO:0009900 | dehiscence | IEP | HCCA |
BP | GO:0009901 | anther dehiscence | IEP | HCCA |
BP | GO:0009987 | cellular process | IEP | HCCA |
BP | GO:0010047 | fruit dehiscence | IEP | HCCA |
BP | GO:0010383 | cell wall polysaccharide metabolic process | IEP | HCCA |
BP | GO:0010410 | hemicellulose metabolic process | IEP | HCCA |
BP | GO:0010413 | glucuronoxylan metabolic process | IEP | HCCA |
BP | GO:0010417 | glucuronoxylan biosynthetic process | IEP | HCCA |
BP | GO:0010557 | positive regulation of macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0010604 | positive regulation of macromolecule metabolic process | IEP | HCCA |
MF | GO:0015020 | glucuronosyltransferase activity | IEP | HCCA |
BP | GO:0016051 | carbohydrate biosynthetic process | IEP | HCCA |
MF | GO:0030775 | glucuronoxylan 4-O-methyltransferase activity | IEP | HCCA |
BP | GO:0031325 | positive regulation of cellular metabolic process | IEP | HCCA |
BP | GO:0031328 | positive regulation of cellular biosynthetic process | IEP | HCCA |
BP | GO:0033692 | cellular polysaccharide biosynthetic process | IEP | HCCA |
BP | GO:0034637 | cellular carbohydrate biosynthetic process | IEP | HCCA |
BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0042546 | cell wall biogenesis | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
BP | GO:0043455 | regulation of secondary metabolic process | IEP | HCCA |
BP | GO:0044036 | cell wall macromolecule metabolic process | IEP | HCCA |
BP | GO:0044038 | cell wall macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0044085 | cellular component biogenesis | IEP | HCCA |
BP | GO:0044087 | regulation of cellular component biogenesis | IEP | HCCA |
BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
BP | GO:0044238 | primary metabolic process | IEP | HCCA |
BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
BP | GO:0044262 | cellular carbohydrate metabolic process | IEP | HCCA |
BP | GO:0044264 | cellular polysaccharide metabolic process | IEP | HCCA |
BP | GO:0045491 | xylan metabolic process | IEP | HCCA |
BP | GO:0045492 | xylan biosynthetic process | IEP | HCCA |
BP | GO:0045893 | positive regulation of DNA-templated transcription | IEP | HCCA |
BP | GO:0045935 | positive regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0048518 | positive regulation of biological process | IEP | HCCA |
BP | GO:0048522 | positive regulation of cellular process | IEP | HCCA |
BP | GO:0051173 | positive regulation of nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0051254 | positive regulation of RNA metabolic process | IEP | HCCA |
BP | GO:0070589 | cellular component macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0070592 | cell wall polysaccharide biosynthetic process | IEP | HCCA |
BP | GO:0071554 | cell wall organization or biogenesis | IEP | HCCA |
BP | GO:0071669 | plant-type cell wall organization or biogenesis | IEP | HCCA |
BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
BP | GO:0071840 | cellular component organization or biogenesis | IEP | HCCA |
MF | GO:0080116 | glucuronoxylan glucuronosyltransferase activity | IEP | HCCA |
BP | GO:1900376 | regulation of secondary metabolite biosynthetic process | IEP | HCCA |
BP | GO:1900378 | positive regulation of secondary metabolite biosynthetic process | IEP | HCCA |
BP | GO:1901141 | regulation of lignin biosynthetic process | IEP | HCCA |
BP | GO:1901428 | regulation of syringal lignin biosynthetic process | IEP | HCCA |
BP | GO:1901430 | positive regulation of syringal lignin biosynthetic process | IEP | HCCA |
BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
BP | GO:1902680 | positive regulation of RNA biosynthetic process | IEP | HCCA |
BP | GO:1903338 | regulation of cell wall organization or biogenesis | IEP | HCCA |
BP | GO:1903508 | positive regulation of nucleic acid-templated transcription | IEP | HCCA |
BP | GO:2000652 | regulation of secondary cell wall biogenesis | IEP | HCCA |
BP | GO:2000762 | regulation of phenylpropanoid metabolic process | IEP | HCCA |
No InterPro domains available for this sequence
No external refs found! |