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AT1G06440


Description : Ubiquitin carboxyl-terminal hydrolase family protein


Gene families : OG0004302 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004302_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G06440

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00049810 evm_27.TU.AmTr_v1... Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00055p00024110 evm_27.TU.AmTr_v1... Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT4G33495 RPD1 Ubiquitin carboxyl-terminal hydrolase family protein 0.03 OrthoFinder output from all 47 species
AT5G45790 No alias Ubiquitin carboxyl-terminal hydrolase family protein 0.01 OrthoFinder output from all 47 species
Adi_g012526 RPD1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g082348 RPD1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g14129 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene54987.t1 RPD1, Aspi01Gene54987 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.35G059500.1 RPD1, Ceric.35G059500 not classified & original description: pacid=50580998... 0.03 OrthoFinder output from all 47 species
Dac_g28796 RPD1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g50671 RPD1 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g23653 RPD1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g19831 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01020990001 No alias Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01025854001 No alias Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
LOC_Os01g43040.1 RPD1, LOC_Os01g43040 Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Lfl_g26057 RPD1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g15269 RPD1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g35248 RPD1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g17104 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g30821 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g10276 RPD1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g03187 RPD1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0151.g023415 RPD1 not classified & original description: CDS=1-1575 0.01 OrthoFinder output from all 47 species
Solyc02g081530.1.1 Solyc02g081530 Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc06g063270.4.1 RPD1, Solyc06g063270 Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Spa_g00440 RPD1 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g44867 RPD1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e004384_P001 Zm00001e004384 Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0009507 chloroplast ISM Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR021099 PORR_domain 36 374
No external refs found!