1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT1G05500

AT1G05500 (SYT5, NTMC2T2.1,...)


Aliases : SYT5, NTMC2T2.1, SYTE, NTMC2TYPE2.1, ATSYTE

Description : Calcium-dependent lipid-binding (CaLB domain) family protein


Gene families : OG0000213 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000213_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G05500

Target Alias Description ECC score Gene Family Method Actions
Aev_g03246 NTMC2T1.2, SYTB,... membrane tethering protein (SYT1) of... 0.02 OrthoFinder output from all 47 species
Aob_g18325 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05584 NTMC2TYPE4, NTMC2T4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene38772.t1 NTMC2T1.2, SYTB,... membrane tethering protein (SYT1) of... 0.04 OrthoFinder output from all 47 species
Ceric.07G078600.1 NTMC2T1.2, SYTB,... membrane tethering protein (SYT1) of... 0.02 OrthoFinder output from all 47 species
Dac_g10256 NTMC2T1.2, SYTB,... membrane tethering protein (SYT1) of... 0.02 OrthoFinder output from all 47 species
Dac_g23047 SYT5, NTMC2T2.1,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g10269 NTMC2T1.2, SYTB,... membrane tethering protein (SYT1) of... 0.02 OrthoFinder output from all 47 species
Lfl_g33856 NTMC2TYPE4, NTMC2T4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp3g04720.1 NTMC2TYPE4, NTMC2T4 Synaptotagmin-4 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Pnu_g09751 NTMC2TYPE4, NTMC2T4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0061.g015422 NTMC2TYPE4, NTMC2T4 component *(CPSF100/Ydh1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Sam_g06708 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24830 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g39515 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc12g009790.2.1 SYT5, NTMC2T2.1,... Synaptotagmin-5 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005783 endoplasmic reticulum IDA Interproscan
CC GO:0005886 plasma membrane IDA Interproscan
CC GO:0005886 plasma membrane ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
CC GO:0009506 plasmodesma IDA Interproscan
CC GO:0012505 endomembrane system IDA Interproscan
BP GO:0016126 sterol biosynthetic process RCA Interproscan
BP GO:0019745 pentacyclic triterpenoid biosynthetic process RCA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005829 cytosol IEP HCCA
BP GO:0006897 endocytosis IEP HCCA
CC GO:0008180 COP9 signalosome IEP HCCA
BP GO:0010387 COP9 signalosome assembly IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030118 clathrin coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030125 clathrin vesicle coat IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000008 C2_dom 263 366
IPR000008 C2_dom 435 537
IPR039010 Synaptotagmin_SMP 70 248
No external refs found!