AT1G04270 (RPS15)

Aliases : RPS15

Description : cytosolic ribosomal protein S15

Gene families : OG0002650 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002650_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G04270

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00076070	RPS15,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.11	OrthoFinder output from all 47 species
Adi_g007072	RPS15	component *(uS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Adi_g040175	RPS15	component *(uS19) of small ribosomal-subunit (SSU)...	0.12	OrthoFinder output from all 47 species
Adi_g085505	RPS15	component *(uS19) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Adi_g120609	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Als_g26573	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Aop_g30900	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Aop_g67230	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.24	OrthoFinder output from all 47 species
Azfi_s0132.g049172	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.16	OrthoFinder output from all 47 species
Azfi_s0242.g059794	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.2	OrthoFinder output from all 47 species
Cba_g06102	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Cba_g11233	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ceric.1Z099000.1	Ceric.1Z099000	component *(uS19) of small ribosomal-subunit (SSU)...	0.29	OrthoFinder output from all 47 species
Ceric.37G059400.1	Ceric.37G059400	component *(uS19) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020830.61	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.38	OrthoFinder output from all 47 species
Cre08.g360900	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.49	OrthoFinder output from all 47 species
Dac_g29771	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.15	OrthoFinder output from all 47 species
Dcu_g50656	No alias	not classified & original description: none	0.09	OrthoFinder output from all 47 species
Dde_g09748	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Dde_g47858	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
GSVIVT01000754001	RPS15	Protein biosynthesis.cytosolic ribosome.small subunit...	0.34	OrthoFinder output from all 47 species
GSVIVT01018113001	RPS15	Protein biosynthesis.cytosolic ribosome.small subunit...	0.38	OrthoFinder output from all 47 species
Gb_16516	No alias	component RPS15 of SSU proteome	0.19	OrthoFinder output from all 47 species
Gb_36524	RPS15	component RPS15 of SSU proteome	0.27	OrthoFinder output from all 47 species
LOC_Os03g58430.1	LOC_Os03g58430	component RPS15 of SSU proteome	0.51	OrthoFinder output from all 47 species
LOC_Os07g08660.1	LOC_Os07g08660	component RPS15 of SSU proteome	0.44	OrthoFinder output from all 47 species
Len_g03057	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Len_g14378	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Len_g22890	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Lfl_g00451	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Lfl_g24533	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
MA_14543g0010	No alias	component RPS15 of SSU proteome	0.19	OrthoFinder output from all 47 species
MA_18691g0010	No alias	40S ribosomal protein S15 OS=Picea mariana...	0.17	OrthoFinder output from all 47 species
Mp3g15000.1	No alias	component RPS15 of SSU proteome	0.37	OrthoFinder output from all 47 species
Msp_g19538	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Nbi_g26940	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.11	OrthoFinder output from all 47 species
Pp3c3_23700V3.1	Pp3c3_23700	Ribosomal protein S19 family protein	0.24	OrthoFinder output from all 47 species
Ppi_g36241	RPS15	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0060.g015225	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.23	OrthoFinder output from all 47 species
Sam_g13440	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Sam_g23754	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Sam_g32727	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Sam_g38072	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.15	OrthoFinder output from all 47 species
Smo172403	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.2	OrthoFinder output from all 47 species
Solyc02g082000.3.1	RPS15, Solyc02g082000	component RPS15 of SSU proteome	0.51	OrthoFinder output from all 47 species
Solyc09g083370.3.1	RPS15, Solyc09g083370	component RPS15 of SSU proteome	0.39	OrthoFinder output from all 47 species
Spa_g03572	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.26	OrthoFinder output from all 47 species
Spa_g04015	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Tin_g10752	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.3	OrthoFinder output from all 47 species
Zm00001e011449_P001	Zm00001e011449	component RPS15 of SSU proteome	0.41	OrthoFinder output from all 47 species
Zm00001e011450_P001	Zm00001e011450	component RPS15 of SSU proteome	0.18	OrthoFinder output from all 47 species
Zm00001e032961_P001	Zm00001e032961	component RPS15 of SSU proteome	0.15	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005774	vacuolar membrane	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005840	ribosome	None	Extended
CC	GO:0005886	plasma membrane	IDA	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015935	small ribosomal subunit	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0022626	cytosolic ribosome	IDA	Interproscan
CC	GO:0022627	cytosolic small ribosomal subunit	IDA	Interproscan
CC	GO:0022627	cytosolic small ribosomal subunit	ISS	Interproscan
CC	GO:0030054	cell junction	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0001510	RNA methylation	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
CC	GO:0005622	intracellular anatomical structure	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0009955	adaxial/abaxial pattern specification	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
BP	GO:0030490	maturation of SSU-rRNA	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042274	ribosomal small subunit biogenesis	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0048513	animal organ development	IEP	HCCA
BP	GO:0048569	post-embryonic animal organ development	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002222	Ribosomal_S19	50	135

External Links

No external refs found!

AT1G04270 (RPS15)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation