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  5. AT1G03100

AT1G03100


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG0001501 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001501_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G03100

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00272000 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g03100,... 0.02 OrthoFinder output from all 47 species
AT1G68980 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G69290 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g067157 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g075176 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09800 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g14976 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G012400.1 Ceric.01G012400 not classified & original description: pacid=50592360... 0.07 OrthoFinder output from all 47 species
Ceric.01G123400.1 Ceric.01G123400 not classified & original description: pacid=50591208... 0.03 OrthoFinder output from all 47 species
Dcu_g02987 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g04085 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g09114 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_34245 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.04 OrthoFinder output from all 47 species
Gb_34895 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.04 OrthoFinder output from all 47 species
MA_46631g0010 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.04 OrthoFinder output from all 47 species
MA_743669g0010 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.05 OrthoFinder output from all 47 species
MA_90791g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Pir_g63894 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g088750.3.1 Solyc01g088750 Pentatricopeptide repeat-containing protein At1g69290... 0.05 OrthoFinder output from all 47 species
Solyc04g008410.3.1 Solyc04g008410 Pentatricopeptide repeat-containing protein At1g03100,... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000003 reproduction IEP HCCA
MF GO:0000175 3'-5'-exoribonuclease activity IEP HCCA
BP GO:0000280 nuclear division IEP HCCA
BP GO:0000712 resolution of meiotic recombination intermediates IEP HCCA
BP GO:0000723 telomere maintenance IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004532 exoribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005874 microtubule IEP HCCA
BP GO:0006089 lactate metabolic process IEP HCCA
BP GO:0006312 mitotic recombination IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006808 regulation of nitrogen utilization IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
BP GO:0007051 spindle organization IEP HCCA
BP GO:0007063 regulation of sister chromatid cohesion IEP HCCA
BP GO:0007129 homologous chromosome pairing at meiosis IEP HCCA
BP GO:0007140 male meiotic nuclear division IEP HCCA
BP GO:0007143 female meiotic nuclear division IEP HCCA
BP GO:0008284 positive regulation of cell population proliferation IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009438 methylglyoxal metabolic process IEP HCCA
CC GO:0009524 phragmoplast IEP HCCA
BP GO:0009880 embryonic pattern specification IEP HCCA
BP GO:0009933 meristem structural organization IEP HCCA
BP GO:0009960 endosperm development IEP HCCA
BP GO:0010072 primary shoot apical meristem specification IEP HCCA
BP GO:0010212 response to ionizing radiation IEP HCCA
BP GO:0010257 NADH dehydrogenase complex assembly IEP HCCA
BP GO:0010332 response to gamma radiation IEP HCCA
BP GO:0010389 regulation of G2/M transition of mitotic cell cycle IEP HCCA
BP GO:0010431 seed maturation IEP HCCA
BP GO:0010638 positive regulation of organelle organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016572 obsolete histone phosphorylation IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0016896 exoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
BP GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0032104 regulation of response to extracellular stimulus IEP HCCA
BP GO:0032107 regulation of response to nutrient levels IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0032204 regulation of telomere maintenance IEP HCCA
BP GO:0032504 multicellular organism reproduction IEP HCCA
BP GO:0032878 regulation of establishment or maintenance of cell polarity IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0032981 mitochondrial respiratory chain complex I assembly IEP HCCA
BP GO:0033108 mitochondrial respiratory chain complex assembly IEP HCCA
BP GO:0042138 meiotic DNA double-strand break formation IEP HCCA
BP GO:0042182 ketone catabolic process IEP HCCA
BP GO:0042991 obsolete transcription factor import into nucleus IEP HCCA
BP GO:0043247 telomere maintenance in response to DNA damage IEP HCCA
BP GO:0045595 regulation of cell differentiation IEP HCCA
BP GO:0045787 positive regulation of cell cycle IEP HCCA
BP GO:0045876 positive regulation of sister chromatid cohesion IEP HCCA
BP GO:0046185 aldehyde catabolic process IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0048285 organelle fission IEP HCCA
BP GO:0048825 cotyledon development IEP HCCA
BP GO:0050826 response to freezing IEP HCCA
BP GO:0051130 positive regulation of cellular component organization IEP HCCA
BP GO:0051225 spindle assembly IEP HCCA
BP GO:0051301 cell division IEP HCCA
BP GO:0051304 chromosome separation IEP HCCA
BP GO:0051307 meiotic chromosome separation IEP HCCA
BP GO:0051596 methylglyoxal catabolic process IEP HCCA
BP GO:0061727 methylglyoxal catabolic process to lactate IEP HCCA
BP GO:0061982 meiosis I cell cycle process IEP HCCA
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
BP GO:0090068 positive regulation of cell cycle process IEP HCCA
BP GO:0090421 embryonic meristem initiation IEP HCCA
CC GO:0099080 supramolecular complex IEP HCCA
CC GO:0099081 supramolecular polymer IEP HCCA
CC GO:0099512 supramolecular fiber IEP HCCA
CC GO:0099513 polymeric cytoskeletal fiber IEP HCCA
BP GO:0140013 meiotic nuclear division IEP HCCA
BP GO:0140352 export from cell IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
BP GO:1901987 regulation of cell cycle phase transition IEP HCCA
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP HCCA
BP GO:1902749 regulation of cell cycle G2/M phase transition IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
BP GO:2000114 regulation of establishment of cell polarity IEP HCCA
BP GO:2001252 positive regulation of chromosome organization IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 552 597
IPR002885 Pentatricopeptide_repeat 638 684
IPR002885 Pentatricopeptide_repeat 334 361
IPR002885 Pentatricopeptide_repeat 502 527
No external refs found!