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  5. AT1G02990

AT1G02990


Description : BEST Arabidopsis thaliana protein match is: CW-type Zinc Finger (TAIR:AT3G62900.1); Has 5847 Blast hits to 4410 proteins in 438 species: Archae - 17; Bacteria - 452; Metazoa - 2463; Fungi - 354; Plants - 306; Viruses - 11; Other Eukaryotes - 2244 (source: NCBI BLink).


Gene families : OG0002651 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002651_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G02990

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00195320 evm_27.TU.AmTr_v1... No description available 0.13 OrthoFinder output from all 47 species
Adi_g114343 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g43022 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g21202 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Als_g14406 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Cba_g32046 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.34G045900.1 Ceric.34G045900 not classified & original description: pacid=50623623... 0.04 OrthoFinder output from all 47 species
Dac_g09109 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g03192 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ehy_g25271 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
GSVIVT01010964001 No alias No description available 0.17 OrthoFinder output from all 47 species
GSVIVT01017765001 No alias No description available 0.05 OrthoFinder output from all 47 species
Gb_16688 No alias no hits & (original description: none) 0.12 OrthoFinder output from all 47 species
Gb_29110 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_31926 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os03g22580.2 LOC_Os03g22580 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Mp7g19200.1 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Ore_g13062 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g15187 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g28894 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g03272 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Smo426541 No alias No description available 0.06 OrthoFinder output from all 47 species
Solyc01g067600.3.1 Solyc01g067600 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Solyc06g008720.4.1 Solyc06g008720 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Solyc09g074670.4.1 Solyc09g074670 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Spa_g12838 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g26746 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e035816_P001 Zm00001e035816 no hits & (original description: none) 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
CC GO:0005829 cytosol IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009411 response to UV IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009606 tropism IEP HCCA
BP GO:0009629 response to gravity IEP HCCA
BP GO:0009630 gravitropism IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010048 vernalization response IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0043473 pigmentation IEP HCCA
BP GO:0043476 pigment accumulation IEP HCCA
BP GO:0043478 pigment accumulation in response to UV light IEP HCCA
BP GO:0043479 pigment accumulation in tissues in response to UV light IEP HCCA
BP GO:0043480 pigment accumulation in tissues IEP HCCA
BP GO:0043481 anthocyanin accumulation in tissues in response to UV light IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0048437 floral organ development IEP HCCA
BP GO:0048440 carpel development IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!