AT1G01780

Description : GATA type zinc finger transcription factor family protein

Gene families : OG0000440 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000440_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G01780
Cluster	HCCA: Cluster_66

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00009p00259550	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.LIM...	0.07	OrthoFinder output from all 47 species
AMTR_s00065p00168710	WLIM1,...	RNA biosynthesis.transcriptional activation.LIM...	0.04	OrthoFinder output from all 47 species
Adi_g004397	WLIM1	LIM-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g077331	WLIM1	LIM-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Adi_g106595	WLIM1	LIM-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g106596	No alias	LIM-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g02798	No alias	LIM-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g06316	WLIM1	LIM-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.11G018100.1	WLIM1, Ceric.11G018100	LIM-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.34G067600.1	WLIM1, Ceric.34G067600	LIM-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Dcu_g30378	WLIM1	LIM-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g14000	No alias	LIM-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Ehy_g15259	No alias	LIM-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01007812001	WLIM1	RNA biosynthesis.transcriptional activation.LIM...	0.04	OrthoFinder output from all 47 species
GSVIVT01019807001	No alias	RNA biosynthesis.transcriptional activation.LIM...	0.03	OrthoFinder output from all 47 species
LOC_Os02g42820.1	LOC_Os02g42820	transcription factor (LIM)	0.03	OrthoFinder output from all 47 species
LOC_Os04g45010.1	LOC_Os04g45010	transcription factor (LIM)	0.06	OrthoFinder output from all 47 species
LOC_Os10g35930.1	LOC_Os10g35930	transcription factor (LIM)	0.09	OrthoFinder output from all 47 species
LOC_Os12g32620.1	WLIM1, LOC_Os12g32620	transcription factor (LIM)	0.03	OrthoFinder output from all 47 species
Nbi_g08756	WLIM1	LIM-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g31657	WLIM1	LIM-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g07460	No alias	LIM-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g16596	No alias	LIM-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g14488	No alias	LIM-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Solyc01g094320.3.1	Solyc01g094320	transcription factor (LIM)	0.03	OrthoFinder output from all 47 species
Solyc03g114000.3.1	WLIM1, Solyc03g114000	transcription factor (LIM)	0.07	OrthoFinder output from all 47 species
Solyc06g071310.4.1	WLIM1, Solyc06g071310	transcription factor (LIM)	0.03	OrthoFinder output from all 47 species
Solyc08g007940.4.1	Solyc08g007940	transcription factor (LIM)	0.04	OrthoFinder output from all 47 species
Solyc08g080740.3.1	Solyc08g080740	transcription factor (LIM)	0.03	OrthoFinder output from all 47 species
Solyc11g044740.2.1	WLIM1, Solyc11g044740	transcription factor (LIM)	0.06	OrthoFinder output from all 47 species
Spa_g41003	No alias	LIM-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e015234_P001	Zm00001e015234	transcription factor (LIM)	0.05	OrthoFinder output from all 47 species
Zm00001e023098_P001	Zm00001e023098	transcription factor (LIM)	0.11	OrthoFinder output from all 47 species
Zm00001e041310_P001	Zm00001e041310	transcription factor (LIM)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003779	actin binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005856	cytoskeleton	None	Extended
BP	GO:0007015	actin filament organization	None	Extended
MF	GO:0008092	cytoskeletal protein binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015629	actin cytoskeleton	IDA	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
MF	GO:0051015	actin filament binding	IDA	Interproscan
BP	GO:0051017	actin filament bundle assembly	IDA	Interproscan
BP	GO:0061572	actin filament bundle organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0097435	supramolecular fiber organization	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001781	Znf_LIM	104	159
IPR001781	Znf_LIM	10	65

External Links

No external refs found!

AT1G01780

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation