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  5. Pnu_g28490

Pnu_g28490 (LHCB5)


Aliases : LHCB5

Description : component *(LHCb5) of LHC-II complex & original description: none


Gene families : OG0000137 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000137_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g28490
Cluster HCCA: Cluster_138

Target Alias Description ECC score Gene Family Method Actions
Dcu_g22845 LHCB5 component *(LHCb5) of LHC-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g18848 LHCB2.2, LHCB2 component *(LHCb1/2/3) of LHC-II complex & original... 0.04 OrthoFinder output from all 47 species
Mp4g10900.1 LHCB5 component LHCb5 of LHC-II complex 0.02 OrthoFinder output from all 47 species
Ppi_g39667 LHCB3*1, LHCB3 component *(LHCb1/2/3) of LHC-II complex & original... 0.02 OrthoFinder output from all 47 species
Smo75552 LHCB2.3, LHCB2, LHCB2.4 Photosynthesis.photophosphorylation.photosystem... 0.02 OrthoFinder output from all 47 species
Solyc06g063370.3.1 LHCB5, Solyc06g063370 component LHCb5 of LHC-II complex 0.02 OrthoFinder output from all 47 species
Spa_g02789 LHCB1.5, LHB1B2 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0110102 ribulose bisphosphate carboxylase complex assembly IEP HCCA
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 25 184
No external refs found!