AMTR_s00048p00223180 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00048.210

Description : Protein biosynthesis.aminoacyl-tRNA synthetase activities.serine-tRNA ligase

Gene families : OG_01_0006039 (Archaeplastida) Phylogenetic Tree(s): OG_01_0006039_tree ,
OG_02_0008926 (LandPlants) Phylogenetic Tree(s): OG_02_0008926_tree ,
OG_03_0009593 (SeedPlants) Phylogenetic Tree(s): OG_03_0009593_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00048p00223180
Cluster	HCCA: Cluster_170

Target	Alias	Description	ECC score	Gene Family Method
AT1G11870	ATSRS, OVA7, SRS	Seryl-tRNA synthetase	0.05	Archaeplastida
Cpa\|evm.model.tig00001094.6	No alias	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.02	Archaeplastida
Cre02.g082825	No alias	Serine--tRNA ligase, chloroplastic/mitochondrial...	0.01	Archaeplastida
Cre02.g082877	No alias	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.06	Archaeplastida
GSVIVT01004302001	No alias	Serine--tRNA ligase, chloroplastic/mitochondrial...	0.03	Archaeplastida
Gb_15950	No alias	serine-tRNA ligase	0.02	Archaeplastida
MA_10434176g0010	No alias	Serine--tRNA ligase, chloroplastic/mitochondrial...	0.04	Archaeplastida
MA_251870g0010	No alias	Serine--tRNA ligase, chloroplastic/mitochondrial...	0.03	Archaeplastida
Mp6g09660.1	No alias	serine-tRNA ligase	0.07	Archaeplastida
Pp3c5_28560V3.1	No alias	Seryl-tRNA synthetase	0.06	Archaeplastida
Solyc04g074630.4.1	No alias	serine-tRNA ligase	0.1	Archaeplastida
AT1G11870	ATSRS, OVA7, SRS	Seryl-tRNA synthetase	0.05	LandPlants
GSVIVT01004302001	No alias	Serine--tRNA ligase, chloroplastic/mitochondrial...	0.02	LandPlants
MA_10434176g0010	No alias	Serine--tRNA ligase, chloroplastic/mitochondrial...	0.03	LandPlants
Mp6g09660.1	No alias	serine-tRNA ligase	0.05	LandPlants
Pp3c5_28560V3.1	No alias	Seryl-tRNA synthetase	0.05	LandPlants
Solyc04g074630.4.1	No alias	serine-tRNA ligase	0.1	LandPlants
AT1G11870	ATSRS, OVA7, SRS	Seryl-tRNA synthetase	0.05	SeedPlants
GSVIVT01004302001	No alias	Serine--tRNA ligase, chloroplastic/mitochondrial...	0.02	SeedPlants
Gb_15950	No alias	serine-tRNA ligase	0.01	SeedPlants
MA_10434176g0010	No alias	Serine--tRNA ligase, chloroplastic/mitochondrial...	0.02	SeedPlants
Solyc04g074630.4.1	No alias	serine-tRNA ligase	0.09	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEA	Interproscan
MF	GO:0004828	serine-tRNA ligase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	IEA	Interproscan
BP	GO:0006434	seryl-tRNA aminoacylation	IEA	Interproscan
BP	GO:0006520	cellular amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR015866	Ser-tRNA-synth_1_N	76	180
IPR002314	aa-tRNA-synt_IIb	245	413

External Links

No external refs found!

AMTR_s00048p00223180 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation