AMTR_s00048p00181490 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00048.135

Description : Chromatin organisation.DNA methylation.RNA-independent DNA methylation.CMT DNA chromomethylase


Gene families : OG_01_0002196 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002196_tree ,
OG_02_0001823 (LandPlants) Phylogenetic Tree(s): OG_02_0001823_tree ,
OG_03_0002439 (SeedPlants) Phylogenetic Tree(s): OG_03_0002439_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00048p00181490
Cluster HCCA: Cluster_189

Target Alias Description ECC score Gene Family Method Actions
LOC_Os10g01570.1 No alias DNA chromomethylase (CMT) 0.02 Archaeplastida
Mp6g08650.1 No alias DNA chromomethylase (CMT) 0.03 Archaeplastida
Solyc01g006100.4.1 No alias DNA chromomethylase (CMT) 0.04 Archaeplastida
LOC_Os10g01570.1 No alias DNA chromomethylase (CMT) 0.02 LandPlants
Mp6g08650.1 No alias DNA chromomethylase (CMT) 0.03 LandPlants
Solyc01g006100.4.1 No alias DNA chromomethylase (CMT) 0.03 LandPlants
Solyc12g100330.2.1 No alias DNA chromomethylase (CMT) 0.02 LandPlants
Solyc01g006100.4.1 No alias DNA chromomethylase (CMT) 0.02 SeedPlants
Solyc12g100330.2.1 No alias DNA chromomethylase (CMT) 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006306 DNA methylation IEA Interproscan
MF GO:0008168 methyltransferase activity IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001025 BAH_dom 456 569
IPR001525 C5_MeTfrase 785 1147
IPR023780 Chromo_domain 738 776
No external refs found!