AMTR_s00048p00181490 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00048.135

Description : Chromatin organisation.DNA methylation.RNA-independent DNA methylation.CMT DNA chromomethylase

Gene families : OG_01_0002196 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002196_tree ,
OG_02_0001823 (LandPlants) Phylogenetic Tree(s): OG_02_0001823_tree ,
OG_03_0002439 (SeedPlants) Phylogenetic Tree(s): OG_03_0002439_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00048p00181490
Cluster	HCCA: Cluster_189

Target	Alias	Description	ECC score	Gene Family Method
LOC_Os10g01570.1	No alias	DNA chromomethylase (CMT)	0.02	Archaeplastida
Mp6g08650.1	No alias	DNA chromomethylase (CMT)	0.03	Archaeplastida
Solyc01g006100.4.1	No alias	DNA chromomethylase (CMT)	0.04	Archaeplastida
LOC_Os10g01570.1	No alias	DNA chromomethylase (CMT)	0.02	LandPlants
Mp6g08650.1	No alias	DNA chromomethylase (CMT)	0.03	LandPlants
Solyc01g006100.4.1	No alias	DNA chromomethylase (CMT)	0.03	LandPlants
Solyc12g100330.2.1	No alias	DNA chromomethylase (CMT)	0.02	LandPlants
Solyc01g006100.4.1	No alias	DNA chromomethylase (CMT)	0.02	SeedPlants
Solyc12g100330.2.1	No alias	DNA chromomethylase (CMT)	0.02	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006304	DNA modification	None	Extended
BP	GO:0006305	DNA alkylation	None	Extended
BP	GO:0006306	DNA methylation	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044728	DNA methylation or demethylation	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001025	BAH_dom	456	569
IPR001525	C5_MeTfrase	785	1147
IPR023780	Chromo_domain	738	776

External Links

No external refs found!

AMTR_s00048p00181490 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation